BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0305500 Os03g0305500|AK070638
(519 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10920.1 | chr5:3441805-3443892 FORWARD LENGTH=518 721 0.0
AT5G50950.1 | chr5:20729687-20733476 FORWARD LENGTH=511 55 8e-08
AT2G47510.1 | chr2:19498614-19502020 FORWARD LENGTH=493 53 5e-07
>AT5G10920.1 | chr5:3441805-3443892 FORWARD LENGTH=518
Length = 517
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/461 (74%), Positives = 389/461 (84%)
Query: 59 KETKLWGGRFEEGVTDAVEGFTESISYDWQLYKYDIMGSKAHASMLAAQGLITAGDKDII 118
KE KLWGGRFEE VT+ VE FTESIS+D LYK DIMGSKAHASMLA QGLIT DKD I
Sbjct: 56 KEVKLWGGRFEESVTEKVEKFTESISFDKVLYKQDIMGSKAHASMLAHQGLITDSDKDSI 115
Query: 119 LEGLDQIEKLIQDGKFEWRTDREDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRL 178
L GLD IE+ I+ KFEWRTDREDVHMNIEAAL + +GEPAKKLHTARSRNDQ+ TD RL
Sbjct: 116 LRGLDDIERQIEANKFEWRTDREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRL 175
Query: 179 WCRDAIDKILFRIKQFQVSLVLLASKYVDLIVPGYTHLQRAQPVLLPHLLLSYVEQLERD 238
WCRDAID I+ +I+ Q +LV LA K LIVPGYTHLQRAQPVLLPH+LL++VEQLERD
Sbjct: 176 WCRDAIDTIIVKIRNLQRALVELALKNEALIVPGYTHLQRAQPVLLPHVLLTFVEQLERD 235
Query: 239 AGRLVNCRERLNFCPLGACALAGTGLPIDRFKTAKDLKFTAPMKNSIDAVSDRDFVLEFL 298
AGR V+CR RLNF PLGACALAGTGLPIDRF TA L FT PM+NSIDAVSDRDFVLEFL
Sbjct: 236 AGRYVDCRARLNFSPLGACALAGTGLPIDRFMTANALGFTEPMRNSIDAVSDRDFVLEFL 295
Query: 299 AANSIAAVHLSRIGEEWVLWASEEFGFLTPSDSVSTGSSIMPQKKNPDPMELVRGKSARV 358
N+ +HLSR+GEEWVLWASEEFGF+TPSDSVSTGSSIMPQKKNPDPMELVRGKSARV
Sbjct: 296 YTNANTGIHLSRLGEEWVLWASEEFGFMTPSDSVSTGSSIMPQKKNPDPMELVRGKSARV 355
Query: 359 FGDLMTVLTLCKGLPQAYNRDLQEDKEPLFDSVKAVLGMLEVCTEFAQNISFNSKRIQSS 418
GDL+TVLTLCKGLP AYNRD QEDKEP+FDS K ++GM++V EFAQN++FN RI+ S
Sbjct: 356 IGDLVTVLTLCKGLPLAYNRDFQEDKEPMFDSTKTIMGMIDVSAEFAQNVTFNEDRIKKS 415
Query: 419 LPAGYLDATTLADYLVKKGVPFRTSHEIVGRSVALCVSKNCQLAELGLDDLKSVHPVFEG 478
LPAG+LDATTLADYLVKKG+PFR+SH+IVG+ V +CVSK C+L L L+++K + PVFE
Sbjct: 416 LPAGHLDATTLADYLVKKGMPFRSSHDIVGKLVGVCVSKGCELQNLSLEEMKKLSPVFEE 475
Query: 479 DVYEYLGVENAVNKFISYGSTGSEQVKKQLEDWRTQLGISS 519
DV+ +LGVEN+VNKF SYGSTGS V +QL W +L I+S
Sbjct: 476 DVFGFLGVENSVNKFSSYGSTGSNCVAEQLGYWVNKLNITS 516
>AT5G50950.1 | chr5:20729687-20733476 FORWARD LENGTH=511
Length = 510
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 20/228 (8%)
Query: 153 EKVGEPAKKLHTARSRNDQIVTDLRLWCRDAI-DKILFRIKQFQVSLVLLASKYVDLIVP 211
EK+ P ++ ++S ND T + + I +++ +K SL + ++ D++
Sbjct: 160 EKIVHPNDHVNRSQSSNDTFPTVMHIAAATEITSRLIPSLKNLHSSLESKSFEFKDIVKI 219
Query: 212 GYTHLQRAQPVLLPHLLLSYVEQLERDAGRLVNCRERLNFCPLGACALAGTGLPIDRFKT 271
G TH Q A P+ L Y Q+E R+ R+ G A+ GTGL K
Sbjct: 220 GRTHTQDATPLTLGQEFGGYATQVEYGLNRVACTLPRIYQLAQGGTAV-GTGL---NTKK 275
Query: 272 AKDLKFTAPM-----------KNSIDAVSDRDFVLEFLAANSIAAVHLSRIGEEWVLWAS 320
D+K A + +N +A++ D +E + + A L +I + S
Sbjct: 276 GFDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSLNTIATSLMKIANDIRFLGS 335
Query: 321 EE---FGFLTPSDSVSTGSSIMPQKKNPDPMELVRGKSARVFGDLMTV 365
G L+ ++ GSSIMP K NP E + A+V G+ + V
Sbjct: 336 GPRCGLGELSLPEN-EPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAV 382
>AT2G47510.1 | chr2:19498614-19502020 FORWARD LENGTH=493
Length = 492
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 153 EKVGEPAKKLHTARSRNDQIVTDLRLWCRDAID-KILFRIKQFQVSLVLLASKYVDLIVP 211
EK P ++ ++S ND T + + I+ +++ +K +L + ++ D++
Sbjct: 153 EKCVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHSTLESKSFEFKDIVKI 212
Query: 212 GYTHLQRAQPVLLPHLLLSYVEQLERDAGRLVNCRERLNFCPLGACALAGTGLPIDRFKT 271
G TH Q A P+ L Y Q++ R+ RL G A+ GTGL K
Sbjct: 213 GRTHTQDATPLTLGQEFGGYATQVKYGLNRVTCTLPRLYQLAQGGTAV-GTGL---NTKK 268
Query: 272 AKDLKFTAPM-----------KNSIDAVSDRDFVLEFLAANSIAAVHLSRIGEEWVLWAS 320
D+K A + +N +A++ D +E + + A L +I + S
Sbjct: 269 GFDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSLNTIATSLMKIANDIRFLGS 328
Query: 321 EE---FGFLTPSDSVSTGSSIMPQKKNPDPMELVRGKSARVFGDLMTV 365
G L ++ GSSIMP K NP E + A+V G+ + V
Sbjct: 329 GPRCGLGELVLPEN-EPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAV 375
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,838,500
Number of extensions: 444991
Number of successful extensions: 1069
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1069
Number of HSP's successfully gapped: 3
Length of query: 519
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,282,721
Effective search space: 3445611936
Effective search space used: 3445611936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)