Os03g0292800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ran binding protein 1 homolog.
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Os03g0292800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ran binding protein 1 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.73 | 0.331 | 8.77 | -1.03 | 0.883 | -0.451 | 0.55 | -1.63 | -0.382 | 6.98 | 21.6 | 1414 | -- | -- |
| 53.95 | 0.342 | 8.72 | -0.592 | 0.874 | -0.286 | 0.885 | -- | -0.271 | 7.14 | 22.6 | 252 | -- | -- |
| 50.46 | 0.331 | 8.77 | -1.03 | 0.886 | -0.437 | -- | -1.61 | -0.385 | 6.87 | 21.7 | 1397 | -- | -- |
| 54.37 | 0.343 | 8.71 | -0.58 | 0.858 | -0.346 | -- | -- | -0.263 | 7.23 | 22 | 190 | -- | -- |
| 85.09 | 0.43 | 8.78 | -0.814 | -- | -0.528 | -- | -1.17 | -0.342 | -- | 21.4 | 652 | -- | -- |
| 59.75 | 0.362 | 8.74 | -0.731 | 0.875 | -- | 0.552 | -- | -0.388 | 7.04 | -- | -- | -- | -- |
| 60.52 | 0.364 | 8.74 | -0.721 | 0.877 | -- | -- | -- | -0.389 | 6.94 | -- | -- | -- | -- |
| 75.11 | 0.404 | 8.7 | -0.53 | -- | -0.635 | -- | -- | -0.107 | -- | 25.25 | 375 | -- | -- |
| 63.37 | 0.371 | 8.7 | -- | 0.839 | -0.444 | -- | -- | -0.195 | 7.45 | 21.88 | 192 | -- | -- |
| 100.94 | 0.469 | 8.76 | -0.703 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 74.21 | 0.403 | 8.72 | -- | 0.869 | -- | -- | -- | -0.309 | 6.99 | -- | -- | -- | -- |
| 82.28 | 0.422 | 8.68 | -- | -- | -0.705 | -- | -- | -0.0233 | -- | 25.29 | 398 | -- | -- |
| 113.96 | 0.498 | 8.74 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 3 | 50.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 4 | 50.55 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 5 | 50.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 50.66 | temperature | 15.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 10 | 50.69 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 15 | 50.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 25 | 50.98 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 26 | 51.00 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 33 | 51.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 34 | 51.09 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 35 | 51.09 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 40 | 51.10 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 56 | 51.21 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 61 | 51.23 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 75 | 51.35 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 86 | 51.42 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 100 | 51.49 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 101 | 51.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 113 | 51.55 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 129 | 51.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 134 | 51.64 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 138 | 51.66 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 146 | 51.67 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 175 | 51.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 179 | 51.74 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 235 | 51.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 236 | 51.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 261 | 51.95 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 273 | 51.97 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 293 | 52.01 | wind | 5.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 302 | 52.02 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 308 | 52.02 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 309 | 52.03 | wind | 7.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 319 | 52.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 336 | 52.07 | wind | 7.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 342 | 52.08 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 365 | 52.11 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 369 | 52.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 372 | 52.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 377 | 52.12 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 398 | 52.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 422 | 52.18 | wind | 5.0 | 720 | < th | dose independent | rect. | 6 | 7 |
| 460 | 52.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 468 | 52.21 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 508 | 52.25 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 592 | 52.32 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 615 | 52.36 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 616 | 52.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 638 | 52.39 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 640 | 52.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 665 | 52.42 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 675 | 52.43 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 676 | 52.43 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 700 | 52.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 769 | 52.48 | temperature | 25.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 771 | 52.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 819 | 52.52 | temperature | 20.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 836 | 52.53 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 865 | 52.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 866 | 52.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 8 |
| 919 | 52.57 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 926 | 52.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 968 | 52.60 | temperature | 20.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 974 | 52.60 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 982 | 52.61 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |