BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0292800 Os03g0292800|AK069970
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58590.1 | chr5:23680319-23681714 REVERSE LENGTH=220 233 7e-62
AT2G30060.1 | chr2:12827035-12828551 FORWARD LENGTH=218 230 4e-61
AT1G07140.1 | chr1:2192360-2193688 REVERSE LENGTH=229 225 1e-59
AT1G52380.1 | chr1:19509979-19511301 FORWARD LENGTH=441 50 1e-06
AT3G15970.1 | chr3:5408982-5410379 REVERSE LENGTH=466 47 6e-06
>AT5G58590.1 | chr5:23680319-23681714 REVERSE LENGTH=220
Length = 219
Score = 233 bits (593), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 129/160 (80%), Gaps = 2/160 (1%)
Query: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
TGAQVAPIV+LEEVAVTTGEEDE+ +LD+KSK+YRFDKEGNQWKERG GTVKLLKHKETG
Sbjct: 23 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKHKETG 82
Query: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
KVRLVMRQ+KTLKICANHL+++ +QEH+G++KSC+WHA DF+DGELK+E+F IRF S+
Sbjct: 83 KVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASI 142
Query: 145 ENCKKFREMVEEIAXXXXXXXXXXXXXVSSTAGLVEKLSV 184
ENCK F E EIA AGL+E LSV
Sbjct: 143 ENCKTFMEKFTEIAESQQVGKESTQG--DEAAGLIENLSV 180
>AT2G30060.1 | chr2:12827035-12828551 FORWARD LENGTH=218
Length = 217
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/160 (68%), Positives = 130/160 (81%), Gaps = 2/160 (1%)
Query: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
TGAQVAPIV+LEEVAVTTGEEDE+ +LD+KSKLYRFDK+G+QWKERG GTVK LKH+ +G
Sbjct: 26 TGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSG 85
Query: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
K+RLVMRQ+KTLKICANHLV + +QEHAG+DKSCVWHA DF+DGELK+E+F IRF SV
Sbjct: 86 KIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASV 145
Query: 145 ENCKKFREMVEEIAXXXXXXXXXXXXXVSSTAGLVEKLSV 184
ENCK F + +E+A S TAGL+EKL+V
Sbjct: 146 ENCKAFMQKFKEVA--ESEEEKEESKDASDTAGLLEKLTV 183
>AT1G07140.1 | chr1:2192360-2193688 REVERSE LENGTH=229
Length = 228
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 127/160 (79%), Gaps = 2/160 (1%)
Query: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
TGAQVAPIV+LEEVAVTTGEEDE+ +LD+KSKLYRFDK+ NQWKERG GTVK LKHK TG
Sbjct: 24 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83
Query: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
K+RLVMRQ+KTLKICANH V + +QEH G++KSCVWHA DFADGELK+E+F IRF S+
Sbjct: 84 KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143
Query: 145 ENCKKFREMVEEIAXXXXXXXXXXXXXVSSTAGLVEKLSV 184
ENCK F + +E+A + TAGL+EKL+V
Sbjct: 144 ENCKTFMQKFKEVA--ESEEEKEESKDAADTAGLLEKLTV 181
>AT1G52380.1 | chr1:19509979-19511301 FORWARD LENGTH=441
Length = 440
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 36 EEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETGKVRLVMRQAKT 95
+EV+ TGEE+E+V S ++ + G WKERG G +K+ GK RLVMR
Sbjct: 293 QEVSTETGEENEKVAFSADSIMFEYLDGG--WKERGKGELKVNVSSNDGKARLVMRAKGN 350
Query: 96 LKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEM--FAIRFGSVENCKKFREM 153
++ N + K+ A DK + A + E KE + FA++F ++FR
Sbjct: 351 YRLILNASLYPEMKL---ANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVA 407
Query: 154 VE 155
++
Sbjct: 408 ID 409
>AT3G15970.1 | chr3:5408982-5410379 REVERSE LENGTH=466
Length = 465
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 36 EEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKL-LKHKETGKVRLVMRQAK 94
++V+V TGEE+E+ S ++ + + G WKERG G +K+ + E K RLVMR
Sbjct: 320 QDVSVETGEENEKAAFTADSVMFEYLEGG--WKERGKGELKVNISTTENRKARLVMRSKG 377
Query: 95 TLKICANHLVATTTKMQ--EHAGSDKSCVWHALDFADGELKEEMFAIRFGSVENCKKFRE 152
++ N + K+ + G +CV D DG A++F ++FR
Sbjct: 378 NYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDG---LSTLALKFKDPTVVEEFRA 434
Query: 153 MVEE 156
++EE
Sbjct: 435 VIEE 438
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,088,331
Number of extensions: 117977
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 5
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)