BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0292800 Os03g0292800|AK069970
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0292800 Similar to Ran binding protein 1 homolog 294 3e-80
Os05g0350600 Similar to Atranbp1b protein 278 2e-75
>Os03g0292800 Similar to Ran binding protein 1 homolog
Length = 209
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/160 (91%), Positives = 147/160 (91%)
Query: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG
Sbjct: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
Query: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV
Sbjct: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
Query: 145 ENCKKFREMVEEIAXXXXXXXXXXXXXVSSTAGLVEKLSV 184
ENCKKFREMVEEIA VSSTAGLVEKLSV
Sbjct: 145 ENCKKFREMVEEIAEQQGKNEEKENEEVSSTAGLVEKLSV 184
>Os05g0350600 Similar to Atranbp1b protein
Length = 220
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/160 (83%), Positives = 143/160 (89%)
Query: 25 TGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRFDKEGNQWKERGTGTVKLLKHKETG 84
TGAQVAPIV+LEEVAVTTGEEDE+VLLDMK+KLYRFDKEGNQWKERGTGTVKLLKHKE G
Sbjct: 31 TGAQVAPIVRLEEVAVTTGEEDEDVLLDMKAKLYRFDKEGNQWKERGTGTVKLLKHKENG 90
Query: 85 KVRLVMRQAKTLKICANHLVATTTKMQEHAGSDKSCVWHALDFADGELKEEMFAIRFGSV 144
KVRLVMRQAKTLKICANHLVA+TTKMQEHAGSDKSCVWHA DFADGELKEEMFAIRFGSV
Sbjct: 91 KVRLVMRQAKTLKICANHLVASTTKMQEHAGSDKSCVWHAADFADGELKEEMFAIRFGSV 150
Query: 145 ENCKKFREMVEEIAXXXXXXXXXXXXXVSSTAGLVEKLSV 184
ENCKKF+++VEEI+ SS AGL+EKLSV
Sbjct: 151 ENCKKFKDLVEEISESLAKTEGKETEEDSSAAGLLEKLSV 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,605,925
Number of extensions: 170694
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)