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Os03g0289200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to H/ACA ribonucleoprotein complex subunit 1-like protein (GCR 101 snRNP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0141) R2 : 0.567
β1 : 1.24 (0.0515) R2dD : 0.57 R2D : 0.467
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.267 (0.03) R2dN8 : 0.1 R2N8 : -0.00237
σ : 0.264
deviance : 31.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.06 0.235 10.3 1.3 0.681 -1.3 1.04 -1.14 0.299 18 0.752 804 -- --
25.23 0.234 10.3 1.34 0.641 -1.25 0.247 -- 0.308 17.9 0.7378 804 -- --
25.31 0.234 10.2 1.35 0.636 -1.26 -- 0.152 0.319 18.4 0.78 846 -- --
25.35 0.234 10.2 1.34 0.629 -1.25 -- -- 0.316 18.4 0.77 846 -- --
26.36 0.239 10.2 1.32 -- -0.451 -- 0.31 0.296 -- 1.5 887 -- --
27.79 0.247 10.2 1.24 0.28 -- -0.0793 -- 0.262 7.28 -- -- -- --
27.81 0.247 10.2 1.23 0.28 -- -- -- 0.262 7.31 -- -- -- --
26.31 0.239 10.2 1.27 -- -0.447 -- -- 0.283 -- 1.02 895 -- --
66.01 0.378 10.3 -- 0.0108 -0.432 -- -- 0.155 20.8 9.29 886 -- --
31.96 0.264 10.2 1.24 -- -- -- -- 0.267 -- -- -- -- --
67.98 0.386 10.3 -- 0.292 -- -- -- 0.125 7.03 -- -- -- --
61.99 0.367 10.3 -- -- -0.605 -- -- 0.186 -- 9.719 7996 -- --
72.48 0.397 10.3 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.77 temperature 30.0 30 < th dose dependent rect. 5 13
3 24.82 humidity 90.0 90 > th dose dependent rect. 4 22
7 24.90 temperature 10.0 90 > th dose dependent rect. 6 23
12 25.07 radiation 1.0 720 < th dose dependent rect. 20 22
15 25.10 radiation 1.0 720 < th dose independent rect. 17 6
25 25.15 wind 7.0 720 < th dose independent rect. 15 3
32 25.19 radiation 1.0 720 < th dose dependent rect. 1 23
36 25.22 wind 5.0 90 < th dose independent rect. 15 13
37 25.22 temperature 25.0 30 < th dose independent rect. 5 14
38 25.23 radiation 1.0 720 < th dose independent rect. 14 9
41 25.24 radiation 1.0 720 < th dose independent rect. 3 20
42 25.24 radiation 1.0 720 < th dose dependent rect. 3 21
45 25.25 radiation 1.0 720 > th dose independent rect. 15 21
52 25.26 radiation 1.0 1440 < th dose dependent rect. 11 7
53 25.26 radiation 1.0 720 < th dose dependent rect. 5 18
60 25.28 radiation 1.0 720 > th dose independent rect. 13 23
62 25.28 humidity 90.0 270 > th dose dependent rect. 16 18
69 25.29 humidity 90.0 1440 > th dose dependent rect. 20 2
76 25.29 radiation 1.0 720 < th dose dependent rect. 3 23
81 25.31 precipitation 0.1 720 < th dose independent rect. 15 20
83 25.31 precipitation 0.1 720 < th dose dependent rect. 15 20
88 25.32 temperature 20.0 30 > th dose dependent rect. 24 12
93 25.33 radiation 1.0 720 > th dose independent rect. 15 4
95 25.33 temperature 25.0 1440 > th dose independent rect. 19 6
118 25.34 radiation 1.0 720 < th dose independent rect. 1 23
120 25.34 temperature 30.0 90 < th dose dependent rect. 4 19
129 25.35 radiation 1.0 720 < th dose dependent rect. 17 6
137 25.36 temperature 25.0 1440 > th dose independent rect. 20 4
138 25.36 temperature 25.0 1440 < th dose independent rect. 19 6
149 25.37 radiation 1.0 720 < th dose dependent rect. 14 9
163 25.38 humidity 90.0 270 > th dose dependent no NA NA
173 25.38 humidity 90.0 270 > th dose dependent rect. 8 23
185 25.39 humidity 90.0 270 > th dose dependent rect. 19 23
186 25.40 temperature 25.0 30 < th dose independent rect. 5 21
199 25.41 humidity 50.0 270 > th dose dependent rect. 17 13
215 25.42 wind 7.0 720 < th dose independent rect. 15 12
216 25.42 wind 5.0 90 < th dose independent rect. 9 19
242 25.44 radiation 10.0 1440 > th dose independent rect. 11 4
270 25.46 radiation 1.0 720 < th dose independent rect. 7 16
276 25.46 radiation 1.0 720 < th dose dependent rect. 4 14
284 25.47 wind 5.0 90 < th dose independent rect. 6 23
286 25.47 temperature 25.0 720 > th dose dependent rect. 15 3
290 25.47 radiation 1.0 1440 < th dose dependent rect. 11 13
295 25.47 temperature 25.0 720 > th dose dependent rect. 15 18
322 25.49 humidity 90.0 1440 > th dose independent rect. 21 1
357 25.50 radiation 1.0 1440 < th dose dependent sin 21 NA
366 25.51 humidity 70.0 1440 > th dose independent rect. 14 1
383 25.51 temperature 25.0 1440 > th dose dependent rect. 14 1
401 25.51 temperature 20.0 30 > th dose dependent rect. 13 23
402 25.52 humidity 90.0 1440 < th dose independent rect. 20 1
405 25.52 temperature 25.0 10 < th dose independent rect. 5 19
414 25.52 humidity 90.0 270 > th dose dependent rect. 23 23
444 25.55 radiation 1.0 720 > th dose independent rect. 7 12
458 25.55 radiation 1.0 720 > th dose independent rect. 7 23
462 25.55 temperature 30.0 90 < th dose dependent rect. 4 11
483 25.56 temperature 25.0 1440 > th dose dependent rect. 12 14
497 25.57 precipitation 0.1 720 < th dose independent rect. 13 15
500 25.57 temperature 25.0 1440 > th dose dependent rect. 13 12
511 25.57 precipitation 0.1 720 < th dose dependent rect. 13 15
532 25.58 humidity 90.0 270 > th dose dependent sin 11 NA
555 25.59 temperature 10.0 270 > th dose dependent rect. 23 12
580 25.60 temperature 25.0 1440 > th dose dependent sin 14 NA
591 25.61 wind 7.0 720 < th dose independent rect. 15 20
593 25.61 radiation 1.0 720 < th dose dependent sin 1 NA
602 25.61 humidity 50.0 30 > th dose dependent rect. 5 13
613 25.61 humidity 90.0 90 > th dose dependent rect. 5 18
614 25.61 humidity 90.0 720 > th dose dependent rect. 7 18
623 25.62 humidity 90.0 270 < th dose independent rect. 23 12
637 25.62 radiation 1.0 720 < th dose dependent rect. 14 18
668 25.64 humidity 80.0 1440 > th dose independent rect. 9 10
669 25.64 humidity 80.0 1440 < th dose independent rect. 9 10
670 25.64 precipitation 0.1 720 < th dose independent rect. 15 12
675 25.64 radiation 10.0 1440 < th dose dependent rect. 16 1
683 25.64 precipitation 0.1 720 < th dose dependent rect. 15 12
694 25.65 radiation 1.0 720 > th dose independent sin 13 NA
696 25.65 radiation 1.0 720 < th dose independent sin 14 NA
704 25.65 temperature 25.0 1440 > th dose dependent rect. 12 6
717 25.66 humidity 70.0 1440 < th dose independent rect. 14 1
721 25.66 radiation 1.0 1440 > th dose independent rect. 11 7
723 25.66 precipitation 0.1 720 < th dose independent rect. 23 19
724 25.66 humidity 80.0 1440 < th dose independent rect. 23 20
745 25.66 precipitation 0.1 720 < th dose dependent rect. 23 19
757 25.66 radiation 1.0 720 < th dose dependent rect. 17 23
760 25.67 humidity 80.0 1440 > th dose independent rect. 11 8
763 25.67 temperature 25.0 270 < th dose independent rect. 11 22
764 25.67 radiation 1.0 720 < th dose independent rect. 20 23
765 25.67 radiation 1.0 720 < th dose dependent no NA NA
794 25.68 temperature 25.0 270 > th dose independent sin 9 NA
830 25.69 precipitation 0.1 720 < th dose independent rect. 16 9
840 25.69 humidity 90.0 270 > th dose independent rect. 17 17
857 25.69 temperature 25.0 1440 > th dose dependent rect. 17 8
861 25.69 precipitation 0.1 720 < th dose dependent rect. 16 9
863 25.69 humidity 80.0 1440 > th dose dependent rect. 11 11
871 25.69 temperature 20.0 30 > th dose dependent rect. 24 21
875 25.69 temperature 20.0 90 > th dose dependent rect. 15 23
878 25.70 humidity 80.0 1440 > th dose independent rect. 17 1
880 25.70 radiation 1.0 1440 < th dose independent rect. 11 7
882 25.70 radiation 1.0 720 < th dose independent rect. 3 16
886 25.70 temperature 25.0 270 > th dose independent rect. 15 21
888 25.70 humidity 90.0 90 > th dose independent rect. 4 22
891 25.70 temperature 25.0 1440 > th dose dependent rect. 20 4
894 25.70 humidity 80.0 1440 > th dose dependent rect. 15 7
921 25.70 humidity 60.0 90 > th dose dependent rect. 3 23
948 25.71 radiation 1.0 720 < th dose independent rect. 14 18
951 25.71 temperature 25.0 270 > th dose dependent sin 10 NA
992 25.72 humidity 80.0 1440 < th dose independent rect. 3 16
999 25.72 radiation 1.0 720 < th dose dependent sin 13 NA