BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0289200 Os03g0289200|AK064364
(256 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52760.1 | chr3:19553932-19554705 REVERSE LENGTH=258 191 4e-49
AT2G36300.1 | chr2:15213362-15214129 REVERSE LENGTH=256 187 5e-48
>AT3G52760.1 | chr3:19553932-19554705 REVERSE LENGTH=258
Length = 257
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 137/214 (64%), Gaps = 8/214 (3%)
Query: 49 LPFMSFDVGNAATSSSPPLFAGPIGVGGS-----GASFEDEPPLLEELGINTRQIWRKTL 103
+PF+ F++G+AA S F G I S ASFEDE PLL+ELGI+ QIW+KT
Sbjct: 46 IPFIPFEIGSAAVSMPAGPFDGTIASSASFGRGVSASFEDEEPLLDELGIHPDQIWKKTR 105
Query: 104 SILHPLRSADPSLHADADXXXXXXXXXXXXXXXXXAGKFHFGIVLGWVTVASLFLYFVFS 163
SIL+P R + ++H D+D AGK FG++LGWV V+S+FLY VF+
Sbjct: 106 SILNPFR-INQTVHKDSDLSGPIFLYLALCLFQLLAGKIQFGVILGWVVVSSIFLYIVFN 164
Query: 164 MLSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRXXXXXXXXX-XXXXXWSTRVCT 222
ML+G R G+L+L+ C SLVGY +LP+VI SA+SLF+P+ W+TR C+
Sbjct: 165 MLAG-RNGNLNLHTCTSLVGYSLLPVVILSAVSLFVPQGAGPVRFVLGAAFVLWATRACS 223
Query: 223 RLLAELASSGDEHRGLIAYACWLVYMLFSLLVVF 256
L+ LA G+EHRGLI+YAC+L+Y LFSLLV+F
Sbjct: 224 NLVVSLADGGEEHRGLISYACFLIYTLFSLLVIF 257
>AT2G36300.1 | chr2:15213362-15214129 REVERSE LENGTH=256
Length = 255
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 144/217 (66%), Gaps = 13/217 (5%)
Query: 49 LPFMSFDVGNAATSSSPPLFAGPIG--------VGGSGASFEDEPPLLEELGINTRQIWR 100
+PFMSFD+G+AA SS+ P AGP G GG ASFEDE PLL+ELGI+ QIW+
Sbjct: 43 IPFMSFDIGSAAASSATP--AGPFGGTIASSSSFGGGSASFEDEEPLLDELGIHPDQIWK 100
Query: 101 KTLSILHPLRSADPSLHADADXXXXXXXXXXXXXXXXXAGKFHFGIVLGWVTVASLFLYF 160
KT SIL+P R + ++H D+D AGK FG++LGW+ V+S+FLY
Sbjct: 101 KTRSILNPFR-INQAVHKDSDLSGPIFLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYV 159
Query: 161 VFSMLSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRXX-XXXXXXXXXXXXWSTR 219
VF+ML+G R G+L+L+ C SLVGYC+LP+V+ SA+SLF+P+ WSTR
Sbjct: 160 VFNMLAG-RNGNLNLHTCTSLVGYCLLPVVVLSAVSLFVPQGAGPVRFVLAALFVLWSTR 218
Query: 220 VCTRLLAELASSGDEHRGLIAYACWLVYMLFSLLVVF 256
C+ L+ LA G+EHRGLIAYAC+L+Y LFSLLV+F
Sbjct: 219 ACSTLVVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,079,671
Number of extensions: 144510
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)