BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0289200 Os03g0289200|AK064364
         (256 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0289200  Similar to H/ACA ribonucleoprotein complex sub...   351   3e-97

>Os03g0289200 Similar to H/ACA ribonucleoprotein complex subunit 1-like protein
           (GCR 101 snRNP)
          Length = 256

 Score =  351 bits (901), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 181/212 (85%), Positives = 181/212 (85%)

Query: 45  GANPLPFMSFDVGNAATSSSPPLFAGPIGVGGSGASFEDEPPLLEELGINTRQIWRKTLS 104
           GANPLPFMSFDVGNAATSSSPPLFAGPIGVGGSGASFEDEPPLLEELGINTRQIWRKTLS
Sbjct: 45  GANPLPFMSFDVGNAATSSSPPLFAGPIGVGGSGASFEDEPPLLEELGINTRQIWRKTLS 104

Query: 105 ILHPLRSADPSLHADADXXXXXXXXXXXXXXXXXAGKFHFGIVLGWVTVASLFLYFVFSM 164
           ILHPLRSADPSLHADAD                 AGKFHFGIVLGWVTVASLFLYFVFSM
Sbjct: 105 ILHPLRSADPSLHADADLSGPFLFLLSFGLFQLLAGKFHFGIVLGWVTVASLFLYFVFSM 164

Query: 165 LSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRXXXXXXXXXXXXXXWSTRVCTRL 224
           LSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPR              WSTRVCTRL
Sbjct: 165 LSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRGGGLIFGVGMGFVLWSTRVCTRL 224

Query: 225 LAELASSGDEHRGLIAYACWLVYMLFSLLVVF 256
           LAELASSGDEHRGLIAYACWLVYMLFSLLVVF
Sbjct: 225 LAELASSGDEHRGLIAYACWLVYMLFSLLVVF 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,792,220
Number of extensions: 250637
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)