Os03g0288900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0288900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.57 | 0.606 | 3.39 | 0.0842 | 1.16 | 0.82 | 1.3 | 0.379 | 0.343 | 5.8 | 21.3 | 655 | -- | -- |
| 166.91 | 0.602 | 3.4 | 0.00762 | 1.15 | 0.784 | 1.16 | -- | 0.326 | 5.79 | 21.39 | 669 | -- | -- |
| 170.38 | 0.608 | 3.4 | 0.0567 | 1.14 | 0.801 | -- | 0.15 | 0.332 | 5.77 | 21.4 | 669 | -- | -- |
| 169.29 | 0.606 | 3.41 | 0.07 | 1.15 | 0.705 | -- | -- | 0.304 | 5.86 | 22.26 | 700 | -- | -- |
| 226.7 | 0.701 | 3.42 | 0.144 | -- | 0.656 | -- | 0.366 | 0.326 | -- | 24.1 | 1226 | -- | -- |
| 189.47 | 0.645 | 3.35 | 0.28 | 1.06 | -- | 1.09 | -- | 0.537 | 5.45 | -- | -- | -- | -- |
| 192.42 | 0.65 | 3.36 | 0.284 | 1.07 | -- | -- | -- | 0.533 | 5.46 | -- | -- | -- | -- |
| 222.55 | 0.695 | 3.44 | -0.0687 | -- | 0.903 | -- | -- | 0.249 | -- | 24.1 | 2749 | -- | -- |
| 169.34 | 0.606 | 3.41 | -- | 1.15 | 0.723 | -- | -- | 0.284 | 5.87 | 22.27 | 710 | -- | -- |
| 251.78 | 0.741 | 3.37 | 0.319 | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
| 194.55 | 0.652 | 3.36 | -- | 1.07 | -- | -- | -- | 0.501 | 5.45 | -- | -- | -- | -- |
| 222.63 | 0.695 | 3.44 | -- | -- | 0.892 | -- | -- | 0.248 | -- | 24.02 | 2749 | -- | -- |
| 254.47 | 0.745 | 3.38 | -- | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.50 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 7 |
| 3 | 159.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 10 | 160.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 20 | 161.31 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 18 |
| 21 | 161.32 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 27 | 161.69 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 17 |
| 31 | 161.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 35 | 162.03 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 44 | 162.25 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 21 |
| 47 | 162.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 54 | 162.42 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 5 |
| 93 | 163.36 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 101 | 163.48 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 120 | 163.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 135 | 163.93 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 160 | 164.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 176 | 164.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 184 | 164.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 256 | 165.22 | wind | 3 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 285 | 165.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 306 | 165.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 310 | 165.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 395 | 166.05 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 431 | 166.21 | wind | 3 | 30 | < th | dose dependent | rect. | 3 | 4 |
| 443 | 166.27 | humidity | 90 | 30 | > th | dose dependent | rect. | 2 | 8 |
| 469 | 166.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 514 | 166.45 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 540 | 166.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 545 | 166.56 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 547 | 166.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 551 | 166.58 | humidity | 90 | 30 | > th | dose dependent | sin | 3 | NA |
| 557 | 166.61 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 574 | 166.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 626 | 166.71 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 650 | 166.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 654 | 166.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 666 | 166.73 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 692 | 166.73 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 695 | 166.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 733 | 166.78 | temperature | 30 | 14400 | < th | dose independent | sin | 2 | NA |
| 766 | 166.80 | temperature | 30 | 14400 | > th | dose independent | sin | 1 | NA |
| 815 | 166.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 820 | 166.87 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 828 | 166.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 853 | 166.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 22 |
| 878 | 166.88 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |