BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0288900 Os03g0288900|AK100329
(541 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0288900 Conserved hypothetical protein 687 0.0
>Os03g0288900 Conserved hypothetical protein
Length = 541
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/541 (67%), Positives = 366/541 (67%)
Query: 1 MDPHPTPFAGKRRSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGTVRSS 60
MDPHPTPFAGKRRSV AFGTVRSS
Sbjct: 1 MDPHPTPFAGKRRSVAAAPAKIAAPKPKSIASTRTKTTRKSPPAPPPPRPRRAFGTVRSS 60
Query: 61 NAHDAPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
NAHDAPEK
Sbjct: 61 NAHDAPEKPPPLQKAPKVSPPPPQKPDKVSPPPAQKPSKVSPPPPPPQKSAKVSPPPAAK 120
Query: 121 XXXXXXXXXXXXTKPSRLXXXXXXXXXXGPELDPKPRKKAQRVSFQEDAAMSVAPGSGEK 180
TKPSRL GPELDPKPRKKAQRVSFQEDAAMSVAPGSGEK
Sbjct: 121 PPKLSPPNLAKATKPSRLAAKPPKKAAPGPELDPKPRKKAQRVSFQEDAAMSVAPGSGEK 180
Query: 181 VKVSTDDAAGHTPMVAVRALEKKVSVVASAETPFFSAQNCSNCSLDPLEESTYWLAHIHL 240
VKVSTDDAAGHTPMVAVRALEKKVSVVASAETPFFSAQNCSNCSLDPLEESTYWLAHIHL
Sbjct: 181 VKVSTDDAAGHTPMVAVRALEKKVSVVASAETPFFSAQNCSNCSLDPLEESTYWLAHIHL 240
Query: 241 AESVGKHRVAAAFFQLAFECQAQPIHRIQSELRNYTVRHESASTLTTLFDELLLAHGGIP 300
AESVGKHRVAAAFFQLAFECQAQPIHRIQSELRNYTVRHESASTLTTLFDELLLAHGGIP
Sbjct: 241 AESVGKHRVAAAFFQLAFECQAQPIHRIQSELRNYTVRHESASTLTTLFDELLLAHGGIP 300
Query: 301 VNQPKFETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECDCGGDIVDVAVPSIVKPLE 360
VNQPKFETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECDCGGDIVDVAVPSIVKPLE
Sbjct: 301 VNQPKFETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECDCGGDIVDVAVPSIVKPLE 360
Query: 361 EGMDQPSFERKLNDGFEFDDCEAVIVDKLVGGHSDLEKIVDVNGPSDSETMQSACRSSID 420
EGMDQPSFERKLNDGFEFDDCEAVIVDKLVGGHSDLEKIVDVNGPSDSETMQSACRSSID
Sbjct: 361 EGMDQPSFERKLNDGFEFDDCEAVIVDKLVGGHSDLEKIVDVNGPSDSETMQSACRSSID 420
Query: 421 RLSLKGSPVVSGLSQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXLDXXXXXXXXXXXXXX 480
RLSLKGSPVVSGLSQRQ LD
Sbjct: 421 RLSLKGSPVVSGLSQRQLSSDSPLDKLSPSARSLSAKRLSSVSPLDKKSPFGSSSSKRLS 480
Query: 481 XXXXXXXXXXXXXXXXXXXXXXXNASAGVGDLNEVIADMEFDCPASDDQLELKEHGDSEI 540
NASAGVGDLNEVIADMEFDCPASDDQLELKEHGDSEI
Sbjct: 481 SSCPSSKKSFSSKALSSKRMSSGNASAGVGDLNEVIADMEFDCPASDDQLELKEHGDSEI 540
Query: 541 N 541
N
Sbjct: 541 N 541
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,197,173
Number of extensions: 483457
Number of successful extensions: 943
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 2
Length of query: 541
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 435
Effective length of database: 11,501,117
Effective search space: 5002985895
Effective search space used: 5002985895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)