BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0288900 Os03g0288900|AK100329
         (541 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62550.1  | chr5:25105839-25107875 REVERSE LENGTH=488           63   4e-10

>AT5G62550.1 | chr5:25105839-25107875 REVERSE LENGTH=488
          Length = 487

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 225 LDPLEESTYWLAHIHLAESVGKHRVAAAFFQLAFECQAQPIHRIQSELRNYTVRH 279
           ++ L  STYWL HI LAESV KH ++  FF+LA     +P+ +++ EL+ Y  R+
Sbjct: 139 VEDLSSSTYWLTHIKLAESVAKHSISLGFFKLALHAGCEPLDKMKEELKLYARRN 193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,123,339
Number of extensions: 298574
Number of successful extensions: 527
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 438
Effective length of database: 8,282,721
Effective search space: 3627831798
Effective search space used: 3627831798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)