Os03g0284400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L10-like.
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Os03g0284400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L10-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.85 | 0.357 | 14.3 | 0.641 | 1.78 | -0.121 | -0.254 | -2.55 | -0.155 | 22.1 | 23.94 | 554 | -- | -- |
| 63.67 | 0.374 | 14.4 | 0.319 | 1.73 | 0.423 | 0.173 | -- | -0.189 | 22 | 23.94 | 554 | -- | -- |
| 57.97 | 0.355 | 14.3 | 0.628 | 1.78 | -0.115 | -- | -2.5 | -0.16 | 22.1 | 23.7 | 498 | -- | -- |
| 61.03 | 0.364 | 14.3 | 0.449 | 1.75 | 0.762 | -- | -- | -0.151 | 22.1 | 16.15 | 3730 | -- | -- |
| 220.47 | 0.692 | 14.3 | 0.538 | -- | -1.29 | -- | -3.49 | -0.251 | -- | 38.48 | 758 | -- | -- |
| 66.18 | 0.381 | 14.4 | 0.224 | 1.78 | -- | 0.167 | -- | -0.256 | 22.1 | -- | -- | -- | -- |
| 66.29 | 0.381 | 14.4 | 0.217 | 1.78 | -- | -- | -- | -0.257 | 22.1 | -- | -- | -- | -- |
| 225.86 | 0.7 | 14.4 | -0.122 | -- | -1.42 | -- | -- | -0.471 | -- | 83.74 | 753 | -- | -- |
| 63.64 | 0.372 | 14.4 | -- | 1.8 | 1.03 | -- | -- | -0.263 | 22.1 | 15.02 | 3743 | -- | -- |
| 257.75 | 0.75 | 14.3 | 0.241 | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
| 67.53 | 0.384 | 14.4 | -- | 1.78 | -- | -- | -- | -0.281 | 22.1 | -- | -- | -- | -- |
| 226.22 | 0.701 | 14.4 | -- | -- | -1.38 | -- | -- | -0.453 | -- | 103.8 | 753 | -- | -- |
| 259.28 | 0.752 | 14.4 | -- | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 2 | 51.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 14 | 52.71 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 15 | 52.77 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 41 | 54.06 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 18 |
| 95 | 55.20 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 8 |
| 102 | 55.29 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 20 |
| 128 | 55.63 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 7 |
| 147 | 55.79 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 6 |
| 157 | 55.86 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 184 | 56.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 197 | 56.16 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 19 |
| 202 | 56.19 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 8 |
| 215 | 56.25 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 234 | 56.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 237 | 56.33 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 255 | 56.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 258 | 56.44 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 6 | 17 |
| 295 | 56.59 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 17 |
| 312 | 56.64 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 313 | 56.64 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 340 | 56.74 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 341 | 56.74 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 362 | 56.81 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 12 |
| 367 | 56.83 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 9 |
| 375 | 56.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 418 | 56.99 | radiation | 1 | 90 | > th | dose independent | sin | 8 | NA |
| 424 | 57.00 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 427 | 57.01 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 17 |
| 431 | 57.02 | radiation | 1 | 90 | < th | dose independent | rect. | 23 | 18 |
| 444 | 57.05 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 449 | 57.06 | radiation | 30 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 468 | 57.10 | wind | 7 | 270 | < th | dose independent | rect. | 23 | 16 |
| 494 | 57.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 516 | 57.22 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 518 | 57.22 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 526 | 57.24 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 535 | 57.26 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 598 | 57.41 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 605 | 57.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 632 | 57.46 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 645 | 57.48 | radiation | 1 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 646 | 57.49 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 661 | 57.51 | radiation | 1 | 90 | < th | dose independent | sin | 8 | NA |
| 665 | 57.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 670 | 57.52 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 16 |
| 673 | 57.52 | radiation | 30 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 691 | 57.54 | radiation | 1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 694 | 57.55 | wind | 3 | 43200 | < th | dose dependent | rect. | 15 | 9 |
| 699 | 57.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 730 | 57.60 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 16 |
| 756 | 57.63 | temperature | 20 | 90 | > th | dose independent | sin | 4 | NA |
| 759 | 57.63 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 767 | 57.65 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 774 | 57.66 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 16 |
| 816 | 57.72 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 817 | 57.72 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 831 | 57.73 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 840 | 57.74 | humidity | 60 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 856 | 57.77 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 872 | 57.78 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 880 | 57.79 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 897 | 57.80 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 914 | 57.82 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 916 | 57.82 | wind | 5 | 270 | < th | dose independent | rect. | 21 | 7 |
| 925 | 57.83 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 16 |
| 929 | 57.83 | humidity | 60 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 937 | 57.84 | wind | 5 | 30 | < th | dose independent | rect. | 23 | 7 |
| 984 | 57.87 | radiation | 1 | 90 | < th | dose dependent | sin | 7 | NA |