BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0284400 Os03g0284400|AK069064
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0284400  Similar to Ribosomal protein L10-like               422   e-119
Os05g0121500  Conserved hypothetical protein                      171   4e-43

>Os03g0284400 Similar to Ribosomal protein L10-like
          Length = 220

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/220 (95%), Positives = 210/220 (95%)

Query: 1   METSSFLRTTLPTAKPLPAFQTLAXXXXXXXXXXSTISAAITRGRKEDTVAAVREQLEGC 60
           METSSFLRTTLPTAKPLPAFQTLA          STISAAITRGRKEDTVAAVREQLEGC
Sbjct: 1   METSSFLRTTLPTAKPLPAFQTLAPRPRPRPLRRSTISAAITRGRKEDTVAAVREQLEGC 60

Query: 61  YLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKGMNAWL 120
           YLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKGMNAWL
Sbjct: 61  YLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKGMNAWL 120

Query: 121 FVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFEGKFYAPGDFKALETMPSRAEVYAKL 180
           FVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFEGKFYAPGDFKALETMPSRAEVYAKL
Sbjct: 121 FVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFEGKFYAPGDFKALETMPSRAEVYAKL 180

Query: 181 LGSLQGPATSVVTTLQAPARDVVSVLSAYVRKLEQEVGAA 220
           LGSLQGPATSVVTTLQAPARDVVSVLSAYVRKLEQEVGAA
Sbjct: 181 LGSLQGPATSVVTTLQAPARDVVSVLSAYVRKLEQEVGAA 220



>Os05g0121500 Conserved hypothetical protein
          Length = 191

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 112/162 (69%), Gaps = 5/162 (3%)

Query: 36  TISAAITRGRKEDTVAAVREQLEGCYLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNT 95
           +I AA    R+E     +R +L  C L+AGI   G TV QL+ IR +LP T RL+VAKN+
Sbjct: 13  SIRAAAELARQE----LLRRELVECQLVAGIWCHGFTVSQLRSIRASLPPTARLVVAKNS 68

Query: 96  LVGKAIEGTPWEALKPCMKGMNAWLFVHTEEVPAALKPYRAFQKEERLEETNDFVGAVFE 155
            V  A+ GT WEA++P  +GMNAWLFV ++E+P AL+PYR FQKE +L + NDF GAVFE
Sbjct: 69  DVAAAVAGTRWEAVRPFARGMNAWLFVRSDEIPPALRPYRDFQKEWKL-QLNDFTGAVFE 127

Query: 156 GKFYAPGDFKALETMPSRAEVYAKLLGSLQGPATSVVTTLQA 197
           G+ Y+P DF  LE+MP+R + Y  L+G LQ PA SV+  L+A
Sbjct: 128 GRLYSPDDFAQLESMPTRVQSYQYLVGCLQMPAVSVLAALRA 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,461,396
Number of extensions: 244701
Number of successful extensions: 536
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)