Os03g0283400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0283400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 358.65 | 0.89 | 7.66 | -2.17 | 1.35 | -1.31 | -2.28 | -0.848 | -0.824 | 12 | 72 | 1252 | -- | -- |
| 360.06 | 0.884 | 7.68 | -2.28 | 1.34 | -1.34 | -2.41 | -- | -0.859 | 12 | 71.71 | 1250 | -- | -- |
| 380.11 | 0.908 | 7.66 | -2.18 | 1.33 | -1.31 | -- | -1.43 | -0.815 | 12.1 | 72 | 1239 | -- | -- |
| 384.91 | 0.914 | 7.68 | -2.39 | 1.37 | -1.42 | -- | -- | -0.883 | 12.2 | 71.79 | 1255 | -- | -- |
| 459.06 | 0.998 | 7.7 | -2.32 | -- | -1.44 | -- | -0.942 | -0.881 | -- | 71 | 1560 | -- | -- |
| 424.5 | 0.966 | 7.63 | -2.02 | 1.07 | -- | -2.7 | -- | -0.665 | 11.7 | -- | -- | -- | -- |
| 455.83 | 1 | 7.64 | -2.12 | 1.08 | -- | -- | -- | -0.675 | 11.9 | -- | -- | -- | -- |
| 458.58 | 0.997 | 7.71 | -2.41 | -- | -1.48 | -- | -- | -0.885 | -- | 71.63 | 1560 | -- | -- |
| 535.06 | 1.08 | 7.68 | -- | 1.29 | -1.08 | -- | -- | -0.653 | 12.3 | 71.98 | 1258 | -- | -- |
| 529.53 | 1.08 | 7.66 | -2.16 | -- | -- | -- | -- | -0.689 | -- | -- | -- | -- | -- |
| 574.61 | 1.12 | 7.59 | -- | 1.11 | -- | -- | -- | -0.438 | 12 | -- | -- | -- | -- |
| 607.3 | 1.15 | 7.64 | -- | -- | -1.19 | -- | -- | -0.59 | -- | 71.09 | 1598 | -- | -- |
| 652.15 | 1.19 | 7.61 | -- | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 352.71 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 356.09 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 356.79 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 5 | 357.46 | humidity | 70 | 1440 | > th | dose independent | sin | 11 | NA |
| 14 | 358.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 17 | 358.62 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 21 | 358.69 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 27 | 358.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 44 | 359.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 48 | 359.55 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 50 | 359.65 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 59 | 360.06 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 98 | 361.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 99 | 361.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 121 | 361.35 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 162 | 362.18 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 255 | 363.80 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 268 | 363.98 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 275 | 364.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 277 | 364.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 309 | 364.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 324 | 364.47 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 330 | 364.53 | radiation | 10 | 1440 | > th | dose independent | sin | 12 | NA |
| 375 | 364.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 403 | 364.93 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 405 | 364.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 406 | 364.95 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 422 | 365.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 428 | 365.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 435 | 365.25 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 451 | 365.38 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 458 | 365.41 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 459 | 365.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 461 | 365.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 469 | 365.44 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 481 | 365.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 492 | 365.58 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 493 | 365.58 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 497 | 365.59 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 518 | 365.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 528 | 365.74 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 533 | 365.77 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 570 | 365.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 20 |
| 571 | 365.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 575 | 365.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 586 | 365.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 591 | 365.99 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 594 | 366.00 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 612 | 366.01 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 615 | 366.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 758 | 366.41 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 768 | 366.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 800 | 366.62 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 819 | 366.70 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 820 | 366.70 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 910 | 366.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 917 | 366.87 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
| 947 | 366.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 955 | 366.92 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |