BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0283400 Os03g0283400|AK064670
         (363 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37300.2  | chr2:15662845-15664599 REVERSE LENGTH=249           65   8e-11

>AT2G37300.2 | chr2:15662845-15664599 REVERSE LENGTH=249
          Length = 248

 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 42/49 (85%)

Query: 66  RTVECLRGRLLAERVASKAAKEEADSLAKRLDELEKKLSDEVKIRNKAE 114
           RTVECLRGRLLAER  S++AKEEA+ + ++++ELE+ L +E+++R KAE
Sbjct: 91  RTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAE 139



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.127    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,502,079
Number of extensions: 324156
Number of successful extensions: 1623
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1624
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)