BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0283400 Os03g0283400|AK064670
         (363 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0283400  Conserved hypothetical protein                      667   0.0  

>Os03g0283400 Conserved hypothetical protein
          Length = 363

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/363 (92%), Positives = 336/363 (92%)

Query: 1   MQRQKQPQPSHIVRPSLTPNLGPLDTTTTTRNVDERREAKLGEMAATAMQCXXXXXXXXX 60
           MQRQKQPQPSHIVRPSLTPNLGPLDTTTTTRNVDERREAKLGEMAATAMQC         
Sbjct: 1   MQRQKQPQPSHIVRPSLTPNLGPLDTTTTTRNVDERREAKLGEMAATAMQCRGGERSEDG 60

Query: 61  XXXXMRTVECLRGRLLAERVASKAAKEEADSLAKRLDELEKKLSDEVKIRNKAERRLRRA 120
               MRTVECLRGRLLAERVASKAAKEEADSLAKRLDELEKKLSDEVKIRNKAERRLRRA
Sbjct: 61  GGGGMRTVECLRGRLLAERVASKAAKEEADSLAKRLDELEKKLSDEVKIRNKAERRLRRA 120

Query: 121 IKKLESLKILDVELXXXXXXXXXXXXXXGHRAPETEADVNNPGSSAGSCTQVNSSQEGSW 180
           IKKLESLKILDVEL              GHRAPETEADVNNPGSSAGSCTQVNSSQEGSW
Sbjct: 121 IKKLESLKILDVELSDSSIGSLSSNSCSGHRAPETEADVNNPGSSAGSCTQVNSSQEGSW 180

Query: 181 CSVVSEQSPSVHCKEEEENGLDPEDAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPS 240
           CSVVSEQSPSVHCKEEEENGLDPEDAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPS
Sbjct: 181 CSVVSEQSPSVHCKEEEENGLDPEDAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPS 240

Query: 241 DFGSSKSQDNQRDEDDDRLALVLVDPQPNAETGNEDDMRIDIQARKAQAEPREGDGEMEE 300
           DFGSSKSQDNQRDEDDDRLALVLVDPQPNAETGNEDDMRIDIQARKAQAEPREGDGEMEE
Sbjct: 241 DFGSSKSQDNQRDEDDDRLALVLVDPQPNAETGNEDDMRIDIQARKAQAEPREGDGEMEE 300

Query: 301 ANELAIVLVDPQPEPKAEPAATARPRNDVQSVLLALRQVKEQLRYTIERRSELVAHQELC 360
           ANELAIVLVDPQPEPKAEPAATARPRNDVQSVLLALRQVKEQLRYTIERRSELVAHQELC
Sbjct: 301 ANELAIVLVDPQPEPKAEPAATARPRNDVQSVLLALRQVKEQLRYTIERRSELVAHQELC 360

Query: 361 GHC 363
           GHC
Sbjct: 361 GHC 363



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.127    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,215,730
Number of extensions: 549269
Number of successful extensions: 3034
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3032
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)