Os03g0254800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1).
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Os03g0254800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chorismate synthase 1, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.94 | 0.253 | 12.7 | -0.768 | 0.381 | 0.476 | -0.0363 | -1.15 | 0.0278 | 6.32 | 93.47 | 189 | -- | -- |
| 30.04 | 0.255 | 12.7 | -0.755 | 0.375 | 0.469 | -0.143 | -- | 0.0265 | 6.29 | 93.55 | 209 | -- | -- |
| 28.95 | 0.251 | 12.7 | -0.768 | 0.382 | 0.474 | -- | -1.17 | 0.0267 | 6.31 | 93.46 | 186 | -- | -- |
| 30.18 | 0.256 | 12.7 | -0.781 | 0.36 | 0.411 | -- | -- | 0.0284 | 6.37 | 92.62 | 229 | -- | -- |
| 34.07 | 0.272 | 12.7 | -0.785 | -- | 0.689 | -- | -0.66 | 0.0888 | -- | 91.42 | 291 | -- | -- |
| 32.05 | 0.265 | 12.7 | -0.745 | 0.484 | -- | -0.21 | -- | -0.0203 | 6.04 | -- | -- | -- | -- |
| 32.16 | 0.266 | 12.7 | -0.747 | 0.483 | -- | -- | -- | -0.0195 | 6.02 | -- | -- | -- | -- |
| 34.51 | 0.274 | 12.7 | -0.802 | -- | 0.617 | -- | -- | 0.08 | -- | 90.43 | 307 | -- | -- |
| 45.65 | 0.315 | 12.7 | -- | 0.397 | 0.469 | -- | -- | 0.0876 | 6.05 | 94.43 | 331 | -- | -- |
| 44.23 | 0.311 | 12.7 | -0.733 | -- | -- | -- | -- | -0.0086 | -- | -- | -- | -- | -- |
| 46.88 | 0.32 | 12.7 | -- | 0.472 | -- | -- | -- | 0.0637 | 6.1 | -- | -- | -- | -- |
| 51.18 | 0.333 | 12.7 | -- | -- | 0.571 | -- | -- | 0.158 | -- | 91.25 | 320 | -- | -- |
| 58.41 | 0.357 | 12.7 | -- | -- | -- | -- | -- | 0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.91 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 2 | 28.13 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 4 |
| 13 | 28.81 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 14 | 28.90 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 19 | 29.00 | wind | 3 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 22 | 29.02 | wind | 3 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 25 | 29.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 26 | 29.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 28 | 29.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 31 | 29.08 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 13 |
| 33 | 29.09 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 41 | 29.14 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 56 | 29.17 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 73 | 29.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 80 | 29.22 | wind | 1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 87 | 29.23 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 8 |
| 93 | 29.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 94 | 29.24 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 99 | 29.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 104 | 29.24 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 114 | 29.26 | radiation | 10 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 120 | 29.27 | humidity | 90 | 270 | > th | dose dependent | sin | 12 | NA |
| 127 | 29.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 144 | 29.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 175 | 29.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 202 | 29.36 | humidity | 90 | 30 | > th | dose dependent | rect. | 1 | 22 |
| 205 | 29.37 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 235 | 29.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 284 | 29.40 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 321 | 29.43 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 322 | 29.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 324 | 29.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 401 | 29.47 | wind | 1 | 14400 | < th | dose dependent | sin | 16 | NA |
| 428 | 29.49 | radiation | 10 | 4320 | < th | dose dependent | sin | 9 | NA |
| 473 | 29.52 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 475 | 29.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 479 | 29.52 | wind | 3 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 521 | 29.55 | radiation | 40 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 580 | 29.56 | radiation | 40 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 599 | 29.57 | radiation | 10 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 601 | 29.57 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 643 | 29.59 | humidity | 90 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 650 | 29.60 | radiation | 10 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 661 | 29.60 | radiation | 10 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 662 | 29.60 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 663 | 29.60 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 665 | 29.60 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 680 | 29.61 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 688 | 29.61 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 695 | 29.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 769 | 29.64 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 772 | 29.64 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 797 | 29.65 | humidity | 70 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 814 | 29.65 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 19 |
| 816 | 29.66 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 827 | 29.66 | wind | 9 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 882 | 29.68 | radiation | 20 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 887 | 29.68 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 895 | 29.68 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 929 | 29.69 | radiation | 10 | 4320 | < th | dose independent | sin | 10 | NA |