BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0254800 Os03g0254800|AK099850
         (438 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48850.1  | chr1:18065154-18067956 REVERSE LENGTH=437          602   e-172

>AT1G48850.1 | chr1:18065154-18067956 REVERSE LENGTH=437
          Length = 436

 Score =  602 bits (1552), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 280/397 (70%), Positives = 336/397 (84%), Gaps = 1/397 (0%)

Query: 28  SAPASLRFSVGRRRAARLEVKASANVFGNYFQVATYGESHGGGVGCVISGCPPRIPLTEA 87
           S+PA ++ S+  +     +++A+ + +G +F+V+T+GESHGGGVGC+I GCPPRIPLTE+
Sbjct: 30  SSPA-VQISLRTQTRKNFQIQATGSSYGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTES 88

Query: 88  DMQVELDRRRPGQSRITTPRKETDTCKILSGTHEGMTTGTPIHVFVPNTDQRGGDYSEMA 147
           D+Q +LDRRRPGQSRITTPRKETDTC+I SG  EGMTTGTPIHVFVPNTDQRG DYSEM+
Sbjct: 89  DLQFDLDRRRPGQSRITTPRKETDTCRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMS 148

Query: 148 KAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVXXXXXXXXXXXXXSGVEILAFVSK 207
            AYRPSHADATYD KYGVR+VQGGGRSSARETIGRV             +G EILA+VS+
Sbjct: 149 VAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQ 208

Query: 208 VHQVVLPEDAVDYDTVTMEQIESNIVRCPDPEYAQKMIDAIDKVRVRGDSIGGVVTCIAR 267
           VH VVLPE+ VD++ +T+EQIE+NIVRCP+PEYA+KMI AID VR +G+S+GGVVTCI R
Sbjct: 209 VHHVVLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVR 268

Query: 268 NVPRGIGSPVFDKLEAELAKAMLSLPASKGFEIGSGFAGTDYTGSEHNDEFYMDEAGNVR 327
           N PRG+G+PVFDKLEAELAKA +SLPA+KGFE GSGFAGT  TG EHNDEFY DE G +R
Sbjct: 269 NAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIR 328

Query: 328 TRTNRSGGVQGGISNGEIIYFKVAFKPTATIGKKQHTVSREHEDVELLARGRHDPCVVPR 387
           TRTNRSGG+QGGISNGEII  +VAFKPT+TIG+KQ+TV+R+  + E++ARGRHDPCVVPR
Sbjct: 329 TRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPR 388

Query: 388 AVPMVESMAALVLMDQLMAHIAQCEMFPLNLALQEPV 424
           AVPMVE+M ALVL+DQLMA  AQC +FP+N  LQEP+
Sbjct: 389 AVPMVEAMVALVLVDQLMAQYAQCHLFPINPELQEPL 425



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,929,084
Number of extensions: 370828
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)