Os03g0245100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dihydrodipicolinate reductase family protein.
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Os03g0245100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dihydrodipicolinate reductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.6 | 0.334 | 9.76 | -0.54 | 0.327 | -0.857 | -0.5 | 0.181 | -0.671 | 18.2 | 60.76 | 795 | -- | -- |
| 50.6 | 0.331 | 9.76 | -0.523 | 0.365 | -0.836 | -0.544 | -- | -0.665 | 18.2 | 60.01 | 831 | -- | -- |
| 50.99 | 0.333 | 9.77 | -0.55 | 0.359 | -0.881 | -- | 0.392 | -0.679 | 17.6 | 61.21 | 834 | -- | -- |
| 51.22 | 0.333 | 9.77 | -0.518 | 0.389 | -0.861 | -- | -- | -0.672 | 17.7 | 60.72 | 860 | -- | -- |
| 52.35 | 0.337 | 9.77 | -0.56 | -- | -1.07 | -- | 0.619 | -0.711 | -- | 65.12 | 657 | -- | -- |
| 61.2 | 0.367 | 9.77 | -0.508 | 0.669 | -- | -0.484 | -- | -0.629 | 19.5 | -- | -- | -- | -- |
| 61.86 | 0.368 | 9.77 | -0.496 | 0.669 | -- | -- | -- | -0.63 | 19.5 | -- | -- | -- | -- |
| 52.98 | 0.339 | 9.76 | -0.513 | -- | -1.05 | -- | -- | -0.702 | -- | 65.19 | 663 | -- | -- |
| 58.17 | 0.355 | 9.76 | -- | 0.425 | -0.839 | -- | -- | -0.627 | 17.7 | 63.25 | 887 | -- | -- |
| 85.8 | 0.433 | 9.75 | -0.506 | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
| 68.34 | 0.387 | 9.75 | -- | 0.673 | -- | -- | -- | -0.575 | 19.5 | -- | -- | -- | -- |
| 59.62 | 0.36 | 9.76 | -- | -- | -1.02 | -- | -- | -0.663 | -- | 69.94 | 640 | -- | -- |
| 92.55 | 0.449 | 9.74 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.60 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 46.85 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 6 | 47.19 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 7 | 47.24 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 8 | 47.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 13 | 47.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 14 | 47.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 15 | 47.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 26 | 47.99 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 29 | 48.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 30 | 48.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 32 | 48.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 33 | 48.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 38 | 48.31 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 51 | 48.59 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 79 | 48.94 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 85 | 48.97 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 91 | 49.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 93 | 49.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 99 | 49.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 101 | 49.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 110 | 49.14 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 113 | 49.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 120 | 49.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 122 | 49.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 127 | 49.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 160 | 49.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 178 | 49.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 185 | 49.50 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 195 | 49.55 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 206 | 49.65 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 216 | 49.70 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 217 | 49.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 293 | 50.02 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 310 | 50.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 314 | 50.13 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 364 | 50.28 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 1 | 14 |
| 414 | 50.41 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 417 | 50.41 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 434 | 50.43 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 442 | 50.45 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 454 | 50.47 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 456 | 50.48 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 478 | 50.50 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 495 | 50.54 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 539 | 50.60 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 540 | 50.60 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 545 | 50.61 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 553 | 50.62 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 567 | 50.66 | humidity | 80.0 | 720 | > th | dose independent | rect. | 20 | 20 |
| 593 | 50.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 621 | 50.75 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 623 | 50.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 632 | 50.76 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 637 | 50.77 | humidity | 60.0 | 720 | > th | dose dependent | no | NA | NA |
| 698 | 50.82 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 700 | 50.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 702 | 50.83 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 703 | 50.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 708 | 50.84 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 18 | 23 |
| 710 | 50.84 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 715 | 50.85 | humidity | 70.0 | 720 | > th | dose dependent | sin | 23 | NA |
| 730 | 50.87 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 22 |
| 768 | 50.91 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 20 |
| 795 | 50.94 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 806 | 50.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 810 | 50.95 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 816 | 50.96 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 829 | 50.97 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 849 | 50.98 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 901 | 51.04 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 907 | 51.05 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 22 |
| 914 | 51.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 933 | 51.08 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 938 | 51.08 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 953 | 51.10 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |