BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0245100 Os03g0245100|AK069529
         (324 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59890.1  | chr3:22124497-22126491 REVERSE LENGTH=350          409   e-115
AT2G44040.1  | chr2:18221985-18223998 REVERSE LENGTH=348          403   e-113

>AT3G59890.1 | chr3:22124497-22126491 REVERSE LENGTH=350
          Length = 349

 Score =  409 bits (1052), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/273 (68%), Positives = 235/273 (86%)

Query: 52  ILVNGCTGKMGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLS 111
           I+VNGC+GKMG +V +A  S+G+++VP SF S +   +TV V   ++ ++GP+ RE VLS
Sbjct: 77  IMVNGCSGKMGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLS 136

Query: 112 SVIDEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALIS 171
           SV +++P+++VVDYT P +VN NAELY K+G+PFVMGTTGGDR  LYK+V++S  YA+IS
Sbjct: 137 SVFEKYPELIVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVIS 196

Query: 172 PQMGKQVVAFLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVS 231
           PQMGKQVVAFLAAMEIM+EQFPGAF+GY LEV+ESHQA KLD SGTAKAVI+CF+KLGVS
Sbjct: 197 PQMGKQVVAFLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVS 256

Query: 232 YDMNRMVKIRDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDSVSFEFQHNVCGRSIYAEG 291
           YDM+++  IRDP+QQ+E+VGVPEEH+ GHAFHLYHLTSPD +VSFEFQHNVCGRSIYAEG
Sbjct: 257 YDMDQIQLIRDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKTVSFEFQHNVCGRSIYAEG 316

Query: 292 SVDAAMFLHRKVRSNDSKRIYDMIDVLREGSMR 324
           +VDA +FL +K+RS   KRIY+MIDVLREG+MR
Sbjct: 317 TVDAVLFLAKKIRSKAEKRIYNMIDVLREGNMR 349



>AT2G44040.1 | chr2:18221985-18223998 REVERSE LENGTH=348
          Length = 347

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 186/273 (68%), Positives = 233/273 (85%)

Query: 52  ILVNGCTGKMGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLS 111
           I+VNGC+GKMG +V +A  S+G+++VPISF S     + V V   ++ ++GP+ RE VLS
Sbjct: 75  IMVNGCSGKMGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLS 134

Query: 112 SVIDEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALIS 171
           SV ++ P+++VVDYT P +VN NAELY K+G+PFVMGTTGGDR  LY++V+++  YA+IS
Sbjct: 135 SVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVIS 194

Query: 172 PQMGKQVVAFLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVS 231
           PQMGKQVVAFLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVI+CF++LGVS
Sbjct: 195 PQMGKQVVAFLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVS 254

Query: 232 YDMNRMVKIRDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDSVSFEFQHNVCGRSIYAEG 291
           YDM+++  IRDP+QQ+EMVGVPEEHI GHAFHLYHLTSPD++VSFEFQHNVCGRSIYAEG
Sbjct: 255 YDMDQIQLIRDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEG 314

Query: 292 SVDAAMFLHRKVRSNDSKRIYDMIDVLREGSMR 324
           +VDA +FL +K+R    +RIY+MIDVLREG+MR
Sbjct: 315 TVDAVLFLAKKIRLKADQRIYNMIDVLREGNMR 347



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,930,466
Number of extensions: 286033
Number of successful extensions: 691
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)