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Os03g0241200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (OTK27).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.023) R2 : 0.621
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.58 (0.058) R2dE : 0.62 R2E : 0.62
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0595 (0.0484) R2dN8 : 0.000813 R2N8 : 0.00103
σ : 0.432
deviance : 85.84
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 5.958
memory length : 942
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.02
open length of G : 3.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.49 0.383 12.8 0.753 1.48 1.4 0.726 0.0706 0.207 19 10.27 258 7.02 4.1
65.09 0.376 12.8 0.754 1.47 1.33 0.685 -- 0.21 18.8 11.7 158 7.38 5.19
66.43 0.38 12.8 0.707 1.48 1.35 -- -1.46e-05 0.225 18.7 11.13 162 7.32 5.25
66.2 0.379 12.8 0.743 1.47 1.41 -- -- 0.233 19 10.84 161 7.33 5.25
75.61 0.405 12.7 0.702 -- 1.6 -- 0.483 0.133 -- 3.739 937 7.1 3.62
97.89 0.464 12.8 0.806 1.45 -- 0.57 -- 0.174 16.6 -- -- -- --
98.75 0.465 12.7 0.81 1.45 -- -- -- 0.177 16.6 -- -- -- --
75.21 0.404 12.7 0.657 -- 1.56 -- -- 0.161 -- 2.401 945 7.07 3.76
80 0.417 12.8 -- 1.43 1.45 -- -- 0.136 18.9 13.54 154 7.43 5.22
211.37 0.679 12.7 0.753 -- -- -- -- 0.139 -- -- -- -- --
116.03 0.504 12.8 -- 1.44 -- -- -- 0.0873 16.6 -- -- -- --
85.84 0.432 12.8 -- -- 1.58 -- -- 0.0595 -- 5.958 942 7.02 3.85
226.34 0.702 12.8 -- -- -- -- -- 0.0557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.50 temperature 10.0 270 > th dose dependent rect. 7 4
2 66.51 temperature 10.0 270 > th dose dependent rect. 8 2
9 67.68 temperature 10.0 270 > th dose dependent rect. 6 6
12 68.15 temperature 10.0 10 > th dose dependent rect. 9 5
25 69.72 temperature 10.0 10 > th dose dependent rect. 9 18
29 69.90 temperature 10.0 90 > th dose dependent rect. 8 19
31 70.00 temperature 15.0 10 > th dose dependent rect. 9 3
34 70.16 wind 5.0 270 < th dose independent rect. 3 2
38 70.29 wind 5.0 90 < th dose independent rect. 3 5
39 70.29 wind 9.0 270 < th dose dependent rect. 7 4
45 70.59 radiation 1.0 270 < th dose dependent rect. 3 9
46 70.63 radiation 1.0 270 > th dose independent rect. 7 4
50 70.67 radiation 1.0 270 > th dose independent rect. 9 1
51 70.68 wind 9.0 270 < th dose independent rect. 5 22
54 70.73 temperature 15.0 270 > th dose independent rect. 9 1
56 70.77 radiation 1.0 270 < th dose independent rect. 3 9
64 70.89 humidity 90.0 10 < th dose independent rect. 9 5
65 70.94 wind 9.0 90 < th dose independent rect. 8 19
71 71.07 wind 1.0 270 > th dose independent rect. 3 2
73 71.12 wind 1.0 270 > th dose independent rect. 1 6
74 71.16 temperature 15.0 270 > th dose independent rect. 7 4
77 71.19 radiation 1.0 270 < th dose independent rect. 3 3
79 71.27 wind 5.0 270 < th dose independent rect. 1 6
82 71.29 precipitation 0.1 90 < th dose independent rect. 3 5
83 71.29 precipitation 0.1 90 < th dose dependent rect. 3 5
89 71.42 precipitation 0.1 270 < th dose independent rect. 3 2
90 71.42 wind 9.0 270 < th dose dependent rect. 8 2
91 71.42 precipitation 0.1 270 < th dose dependent rect. 3 2
94 71.45 radiation 10.0 270 < th dose dependent rect. 3 3
100 71.51 wind 1.0 270 > th dose independent rect. 2 4
102 71.52 radiation 40.0 90 < th dose independent rect. 13 19
123 71.73 wind 7.0 270 < th dose independent rect. 7 4
125 71.74 temperature 10.0 90 > th dose independent rect. 3 5
127 71.74 temperature 30.0 90 < th dose independent rect. 3 5
128 71.74 humidity 50.0 90 > th dose independent rect. 3 5
130 71.74 atmosphere 995.0 90 > th dose independent rect. 3 5
131 71.74 atmosphere 1015.0 90 < th dose independent rect. 3 5
132 71.74 temperature 10.0 90 > th dose independent rect. 8 19
134 71.76 wind 7.0 270 < th dose independent rect. 9 1
135 71.76 radiation 40.0 10 < th dose independent rect. 12 21
139 71.80 temperature 10.0 270 > th dose independent rect. 3 2
141 71.80 temperature 30.0 270 < th dose independent rect. 3 2
142 71.80 humidity 50.0 270 > th dose independent rect. 3 2
145 71.80 atmosphere 995.0 270 > th dose independent rect. 3 2
146 71.80 atmosphere 1010.0 270 < th dose independent rect. 3 2
148 71.80 radiation 20.0 270 < th dose independent rect. 3 2
151 71.80 temperature 10.0 270 > th dose independent rect. 5 22
154 71.82 radiation 40.0 90 < th dose independent rect. 3 5
157 71.83 humidity 90.0 270 < th dose independent rect. 7 4
187 71.98 precipitation 0.1 270 < th dose independent rect. 9 1
188 71.98 precipitation 0.1 270 < th dose dependent rect. 9 1
191 71.99 humidity 50.0 270 > th dose independent rect. 9 1
201 72.06 precipitation 0.1 90 < th dose independent rect. 8 19
202 72.06 precipitation 0.1 90 < th dose dependent rect. 8 19
203 72.08 humidity 90.0 270 < th dose independent rect. 9 1
208 72.17 atmosphere 995.0 270 > th dose independent rect. 9 1
209 72.17 atmosphere 1015.0 270 < th dose independent rect. 9 1
211 72.17 temperature 10.0 270 > th dose independent rect. 10 23
217 72.22 radiation 1.0 270 > th dose independent rect. 6 7
226 72.30 humidity 50.0 270 > th dose independent rect. 7 4
231 72.33 wind 9.0 10 < th dose independent rect. 9 5
237 72.36 precipitation 0.1 270 < th dose independent rect. 7 4
238 72.36 precipitation 0.1 270 < th dose dependent rect. 7 4
241 72.38 temperature 15.0 270 > th dose independent rect. 6 7
244 72.40 wind 1.0 270 > th dose independent rect. 11 20
277 72.48 temperature 20.0 10 > th dose independent rect. 9 5
284 72.55 atmosphere 995.0 270 > th dose independent rect. 7 4
285 72.55 atmosphere 1015.0 270 < th dose independent rect. 7 4
286 72.55 temperature 10.0 270 > th dose independent rect. 11 20
289 72.57 wind 7.0 270 < th dose independent rect. 6 7
292 72.60 radiation 1.0 10 > th dose independent rect. 9 5
305 72.71 wind 5.0 10 < th dose independent rect. 3 6
309 72.73 precipitation 0.1 270 < th dose independent rect. 6 21
310 72.73 precipitation 0.1 270 < th dose dependent rect. 6 21
333 72.91 temperature 10.0 90 > th dose independent rect. 13 19
338 72.94 wind 9.0 10 < th dose independent rect. 9 18
339 72.96 temperature 10.0 10 > th dose independent rect. 9 5
341 72.96 atmosphere 995.0 10 > th dose independent rect. 9 5
342 72.96 atmosphere 1015.0 10 < th dose independent rect. 9 5
343 72.96 precipitation 0.1 10 < th dose independent rect. 9 5
344 72.96 temperature 10.0 10 > th dose independent rect. 14 19
346 72.96 precipitation 0.1 10 < th dose dependent rect. 9 5
356 73.01 precipitation 0.1 10 < th dose independent rect. 3 6
357 73.01 precipitation 0.1 10 < th dose dependent rect. 3 6
361 73.06 wind 1.0 270 > th dose independent rect. 9 1
376 73.12 precipitation 0.1 270 < th dose independent rect. 11 20
377 73.12 precipitation 0.1 270 < th dose dependent rect. 11 20
378 73.14 radiation 1.0 270 > th dose independent sin 3 NA
381 73.14 precipitation 0.1 270 < th dose independent rect. 1 6
382 73.14 precipitation 0.1 270 < th dose dependent rect. 1 6
400 73.29 wind 1.0 10 > th dose independent rect. 9 5
401 73.29 wind 9.0 270 < th dose dependent rect. 3 3
422 73.38 wind 9.0 90 < th dose dependent rect. 3 5
424 73.41 radiation 1.0 270 < th dose independent sin 3 NA
431 73.41 precipitation 0.1 10 < th dose independent rect. 14 19
432 73.41 precipitation 0.1 10 < th dose dependent rect. 14 19
433 73.42 wind 9.0 10 < th dose independent rect. 14 19
435 73.43 temperature 10.0 270 > th dose independent rect. 1 6
437 73.43 temperature 30.0 270 < th dose independent rect. 1 6
438 73.43 humidity 50.0 270 > th dose independent rect. 1 6
440 73.43 atmosphere 995.0 270 > th dose independent rect. 1 6
441 73.43 atmosphere 1015.0 270 < th dose independent rect. 1 6
442 73.43 radiation 30.0 270 < th dose independent rect. 1 6
452 73.46 wind 9.0 270 < th dose independent rect. 17 9
457 73.48 wind 9.0 90 < th dose independent rect. 13 19
458 73.49 atmosphere 995.0 90 > th dose independent rect. 8 19
464 73.51 radiation 10.0 270 < th dose independent rect. 17 9
465 73.51 precipitation 0.1 10 < th dose independent rect. 9 18
466 73.51 precipitation 0.1 10 < th dose dependent rect. 9 18
470 73.53 precipitation 0.1 270 < th dose independent rect. 6 7
471 73.53 precipitation 0.1 270 < th dose dependent rect. 6 7
488 73.59 wind 9.0 270 < th dose independent rect. 11 20
490 73.60 temperature 10.0 270 > th dose independent rect. 17 9
494 73.60 temperature 10.0 270 > th dose independent rect. 2 15
495 73.60 atmosphere 1015.0 270 < th dose independent rect. 2 15
501 73.66 humidity 50.0 270 > th dose independent rect. 6 7
508 73.68 atmosphere 1015.0 10 < th dose independent rect. 14 19
512 73.70 atmosphere 1015.0 90 < th dose independent rect. 13 19
514 73.71 atmosphere 995.0 270 > th dose independent rect. 6 7
515 73.71 atmosphere 1015.0 270 < th dose independent rect. 6 7
520 73.73 radiation 40.0 90 < th dose dependent rect. 13 19
527 73.77 temperature 10.0 10 > th dose independent rect. 3 6
529 73.77 temperature 30.0 10 < th dose independent rect. 3 6
530 73.77 humidity 50.0 10 > th dose independent rect. 3 6
532 73.77 atmosphere 995.0 10 > th dose independent rect. 3 6
533 73.77 atmosphere 1015.0 10 < th dose independent rect. 3 6
534 73.77 temperature 10.0 10 > th dose independent rect. 9 18
552 73.79 radiation 40.0 270 < th dose dependent rect. 17 9
554 73.81 precipitation 0.1 270 < th dose independent rect. 2 15
555 73.81 atmosphere 995.0 10 > th dose independent rect. 14 19
557 73.81 precipitation 0.1 270 < th dose dependent rect. 2 15
559 73.82 precipitation 0.1 90 < th dose independent rect. 13 19
560 73.82 temperature 10.0 270 > th dose dependent rect. 20 15
561 73.82 precipitation 0.1 90 < th dose dependent rect. 13 19
564 73.83 humidity 50.0 270 > th dose dependent rect. 3 2
575 73.87 precipitation 0.1 270 < th dose independent rect. 10 22
577 73.87 precipitation 0.1 270 < th dose dependent rect. 10 22
581 73.88 temperature 30.0 270 < th dose dependent rect. 3 2
588 73.93 temperature 10.0 1440 > th dose independent rect. 10 5
593 73.93 temperature 10.0 1440 > th dose independent rect. 15 19
615 73.99 precipitation 0.1 270 < th dose independent rect. 17 9
616 73.99 atmosphere 995.0 90 > th dose independent rect. 13 19
618 73.99 precipitation 0.1 270 < th dose dependent rect. 17 9
621 74.02 humidity 50.0 270 > th dose independent rect. 17 9
631 74.04 radiation 40.0 10 < th dose dependent rect. 13 20
683 74.22 atmosphere 995.0 90 > th dose dependent rect. 3 5
718 74.36 atmosphere 995.0 270 > th dose independent rect. 11 20
728 74.39 atmosphere 1015.0 270 < th dose independent rect. 11 20
747 74.46 humidity 50.0 10 > th dose independent rect. 9 5
748 74.46 atmosphere 995.0 270 > th dose independent rect. 17 9
755 74.47 wind 9.0 90 < th dose dependent rect. 8 19
756 74.48 radiation 10.0 270 < th dose dependent sin 5 NA
775 74.49 humidity 50.0 10 > th dose independent rect. 14 19
776 74.49 wind 9.0 270 < th dose independent rect. 10 22
781 74.50 radiation 1.0 270 < th dose dependent sin 3 NA
820 74.67 atmosphere 995.0 270 > th dose dependent rect. 3 3
838 74.72 temperature 10.0 270 > th dose dependent rect. 3 3
845 74.76 radiation 1.0 270 > th dose dependent rect. 8 2
909 74.88 wind 9.0 270 < th dose independent rect. 2 15
923 74.93 atmosphere 995.0 270 > th dose independent rect. 2 15
926 74.94 wind 9.0 10 < th dose dependent rect. 3 6
975 75.04 temperature 30.0 90 < th dose dependent rect. 3 5