BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0241200 Os03g0241200|J023025F04
         (128 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22380.1  | chr4:11812041-11812922 REVERSE LENGTH=129          211   6e-56
AT5G20160.2  | chr5:6804075-6805102 REVERSE LENGTH=161            196   3e-51
AT4G12600.2  | chr4:7453296-7454208 FORWARD LENGTH=184            146   2e-36
AT5G08180.1  | chr5:2631843-2633374 REVERSE LENGTH=157             65   1e-11

>AT4G22380.1 | chr4:11812041-11812922 REVERSE LENGTH=129
          Length = 128

 Score =  211 bits (538), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 112/128 (87%)

Query: 1   MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           M+ EVVNPKAYPLAD+QL++TI+DLVQQA+NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLK 120
                       AEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE SQLK+ IQ+LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128



>AT5G20160.2 | chr5:6804075-6805102 REVERSE LENGTH=161
          Length = 160

 Score =  196 bits (497), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 112/160 (70%), Gaps = 32/160 (20%)

Query: 1   MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANE------------------- 41
           M+ EVVNPKAYPLAD+QL++TILDLVQQA+NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 42  -------------ATKTLNRGISEFVVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQA 88
                        ATKTLNRGISEFVVMAAD             AEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 89  LGRACGVTRPVIACSVTSNEGSQLKTPIQNLKDAIEKLLI 128
           LGRACGVTRPVIACSVTSNE SQLK+ IQ+LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160



>AT4G12600.2 | chr4:7453296-7454208 FORWARD LENGTH=184
          Length = 183

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 100/183 (54%), Gaps = 55/183 (30%)

Query: 1   MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           M+ E VNPKAYPLAD+QL++TILDLVQQA+NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPS---------KQALGRACGVT--------------- 96
                       AEDK   ++ + S           AL    G T               
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 97  -------------------------------RPVIACSVTSNEGSQLKTPIQNLKDAIEK 125
                                          RPVIACSVTSNE SQLK+ IQ+LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

Query: 126 LLI 128
           LLI
Sbjct: 181 LLI 183



>AT5G08180.1 | chr5:2631843-2633374 REVERSE LENGTH=157
          Length = 156

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 8   PKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTXXXXXXX 67
           P A PLA  +L      L+Q+A+  K LK+G  E  K++ RG     V+A +        
Sbjct: 24  PIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 83

Query: 68  XXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSV---------TSNEGSQLKTPIQN 118
                 E+  VPYV+VPSK+ L +A    RP     V         T+ E ++LKT  + 
Sbjct: 84  HLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQ 143

Query: 119 LKDAIEKL 126
           + D I++L
Sbjct: 144 VSDDIKEL 151



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,087,222
Number of extensions: 59497
Number of successful extensions: 91
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 6
Length of query: 128
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 41
Effective length of database: 8,721,377
Effective search space: 357576457
Effective search space used: 357576457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)