BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0241200 Os03g0241200|J023025F04
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0241200  Similar to NHP2-like protein 1 (High mobility ...   231   7e-62
Os10g0124000  High mobility group-like nuclear protein famil...   190   2e-49

>Os03g0241200 Similar to NHP2-like protein 1 (High mobility group-like nuclear
           protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa
           protein) (OTK27)
          Length = 128

 Score =  231 bits (590), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 116/128 (90%)

Query: 1   MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MSQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLK 120
                       AEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128



>Os10g0124000 High mobility group-like nuclear protein family protein
          Length = 126

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 100/123 (81%)

Query: 6   VNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTXXXXX 65
           VNPKAYPLAD+QL   I +LV QA+NYKQLKKGANEATKTLNRGI+EFVVMAAD      
Sbjct: 4   VNPKAYPLADSQLAQAIQELVSQAANYKQLKKGANEATKTLNRGIAEFVVMAADAEPLEI 63

Query: 66  XXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLKDAIEK 125
                  AEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE S L+ PI NLK AIEK
Sbjct: 64  LLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAIEK 123

Query: 126 LLI 128
           LLI
Sbjct: 124 LLI 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,057,582
Number of extensions: 83848
Number of successful extensions: 127
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)