Os03g0223700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0223700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.6 | 0.307 | 10.5 | 0.57 | 0.185 | -0.43 | -0.376 | 0.111 | 0.393 | 7.77 | 10.01 | 94 | -- | -- |
| 42.65 | 0.304 | 10.5 | 0.563 | 0.182 | -0.426 | -0.341 | -- | 0.393 | 7.58 | 10 | 95 | -- | -- |
| 42.97 | 0.305 | 10.5 | 0.572 | 0.178 | -0.426 | -- | -0.00372 | 0.391 | 7.79 | 11.11 | 94 | -- | -- |
| 42.93 | 0.305 | 10.5 | 0.551 | 0.179 | -0.434 | -- | -- | 0.392 | 8.02 | 10 | 95 | -- | -- |
| 44.31 | 0.31 | 10.5 | 0.568 | -- | -0.412 | -- | -0.00862 | 0.393 | -- | 11.28 | 122 | -- | -- |
| 48.46 | 0.326 | 10.5 | 0.504 | 0.407 | -- | -0.039 | -- | 0.357 | 2.51 | -- | -- | -- | -- |
| 48.47 | 0.326 | 10.5 | 0.505 | 0.407 | -- | -- | -- | 0.357 | 2.49 | -- | -- | -- | -- |
| 44.29 | 0.31 | 10.5 | 0.567 | -- | -0.411 | -- | -- | 0.392 | -- | 11.14 | 123 | -- | -- |
| 50.39 | 0.331 | 10.5 | -- | 0.199 | -0.41 | -- | -- | 0.342 | 7.83 | 8.921 | 89 | -- | -- |
| 58.2 | 0.356 | 10.5 | 0.522 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 55.19 | 0.348 | 10.5 | -- | 0.416 | -- | -- | -- | 0.301 | 2.51 | -- | -- | -- | -- |
| 52.04 | 0.336 | 10.5 | -- | -- | -0.381 | -- | -- | 0.316 | -- | 9.28 | 120 | -- | -- |
| 65.39 | 0.377 | 10.5 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 16 |
| 4 | 39.83 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 29 | 40.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 42 | 40.58 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 58 | 40.81 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 59 | 40.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 62 | 40.88 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 72 | 41.02 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 73 | 41.02 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 77 | 41.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 84 | 41.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 89 | 41.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 157 | 41.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 183 | 41.63 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 184 | 41.64 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 192 | 41.67 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 205 | 41.72 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 218 | 41.76 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 221 | 41.77 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 241 | 41.82 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 244 | 41.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 245 | 41.83 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 249 | 41.85 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 252 | 41.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 258 | 41.88 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 276 | 41.93 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 287 | 41.96 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 301 | 42.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 306 | 42.00 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 334 | 42.08 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 337 | 42.08 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 344 | 42.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 353 | 42.12 | humidity | 70.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 383 | 42.17 | humidity | 90.0 | 30 | > th | dose dependent | sin | 22 | NA |
| 389 | 42.18 | radiation | 20.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 391 | 42.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 394 | 42.19 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 400 | 42.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 433 | 42.25 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 434 | 42.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 4 |
| 435 | 42.25 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 451 | 42.28 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 475 | 42.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 484 | 42.32 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 502 | 42.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 506 | 42.36 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 514 | 42.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 521 | 42.37 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 531 | 42.39 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 547 | 42.42 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 549 | 42.42 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 574 | 42.44 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 583 | 42.45 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 587 | 42.45 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 602 | 42.47 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 607 | 42.48 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 617 | 42.49 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 636 | 42.50 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 21 |
| 638 | 42.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 651 | 42.52 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 652 | 42.52 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 659 | 42.53 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 660 | 42.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 705 | 42.58 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 9 |
| 747 | 42.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 755 | 42.62 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 768 | 42.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 878 | 42.65 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 883 | 42.65 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 889 | 42.66 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 8 |
| 949 | 42.69 | temperature | 25.0 | 90 | < th | dose independent | rect. | 16 | 16 |
| 972 | 42.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 974 | 42.71 | humidity | 70.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 975 | 42.71 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 983 | 42.72 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 993 | 42.73 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 997 | 42.73 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |