Os03g0211400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin-binding, plant family protein.
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Os03g0211400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin-binding, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.89 | 0.708 | 5.52 | -0.312 | 0.925 | 1.59 | -0.935 | -0.661 | -0.108 | 5.85 | 14.9 | 589 | -- | -- |
| 227.17 | 0.702 | 5.5 | -0.201 | 0.921 | 1.58 | -0.804 | -- | -0.0768 | 5.84 | 14.86 | 598 | -- | -- |
| 228.73 | 0.704 | 5.51 | -0.275 | 0.929 | 1.61 | -- | -0.201 | -0.0988 | 5.72 | 14.8 | 584 | -- | -- |
| 228.68 | 0.704 | 5.5 | -0.208 | 0.928 | 1.6 | -- | -- | -0.0752 | 5.71 | 14.81 | 584 | -- | -- |
| 246.03 | 0.731 | 5.53 | -0.301 | -- | 1.3 | -- | -0.516 | -0.0692 | -- | 15.6 | 1210 | -- | -- |
| 258.19 | 0.753 | 5.46 | 0.175 | 0.579 | -- | -0.833 | -- | 0.165 | 4.98 | -- | -- | -- | -- |
| 259.67 | 0.755 | 5.46 | 0.176 | 0.574 | -- | -- | -- | 0.168 | 4.52 | -- | -- | -- | -- |
| 246.49 | 0.731 | 5.52 | -0.212 | -- | 1.33 | -- | -- | -0.0584 | -- | 14.84 | 1210 | -- | -- |
| 229.69 | 0.706 | 5.5 | -- | 0.913 | 1.51 | -- | -- | -0.0432 | 5.63 | 14.9 | 573 | -- | -- |
| 277.27 | 0.778 | 5.46 | 0.198 | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
| 260.48 | 0.755 | 5.46 | -- | 0.577 | -- | -- | -- | 0.149 | 4.51 | -- | -- | -- | -- |
| 247.51 | 0.733 | 5.51 | -- | -- | 1.22 | -- | -- | -0.0227 | -- | 15.48 | 1200 | -- | -- |
| 278.3 | 0.779 | 5.47 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.75 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 2 | 221.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 6 | 221.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 7 | 221.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 8 | 221.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 10 | 222.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 11 | 222.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 18 | 223.46 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 20 | 223.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 30 | 223.90 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 34 | 224.03 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 40 | 224.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 41 | 224.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 49 | 224.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 61 | 224.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 66 | 224.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 69 | 224.92 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 72 | 225.01 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 94 | 225.33 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 95 | 225.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 135 | 225.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 138 | 225.82 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 151 | 225.96 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 160 | 226.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 166 | 226.13 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 169 | 226.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 181 | 226.29 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 208 | 226.52 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 216 | 226.59 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 219 | 226.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 232 | 226.71 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 277 | 227.04 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 311 | 227.22 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 327 | 227.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 344 | 227.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 387 | 227.55 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 390 | 227.55 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 407 | 227.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 426 | 227.78 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 453 | 227.90 | wind | 9.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 498 | 228.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 505 | 228.16 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 510 | 228.17 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 587 | 228.54 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 594 | 228.57 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 596 | 228.57 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 691 | 228.95 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 709 | 229.00 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 720 | 229.03 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 755 | 229.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 772 | 229.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 935 | 229.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 938 | 229.77 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 951 | 229.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 952 | 229.84 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 971 | 229.91 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 977 | 229.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 995 | 229.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 13 |