BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0211400 Os03g0211400|AK070892
(771 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39380.1 | chr5:15759163-15760686 REVERSE LENGTH=508 105 1e-22
AT5G15430.1 | chr5:5010180-5011616 FORWARD LENGTH=479 85 1e-16
AT5G07820.1 | chr5:2498861-2500546 REVERSE LENGTH=562 78 2e-14
AT5G61260.1 | chr5:24637109-24638599 FORWARD LENGTH=497 72 1e-12
AT5G04020.1 | chr5:1081980-1086546 REVERSE LENGTH=1496 50 5e-06
>AT5G39380.1 | chr5:15759163-15760686 REVERSE LENGTH=508
Length = 507
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Query: 607 ADGQRPKRISALEQDDDSATPYKLKFKRGKIVELQPDSNG--PRKLKXXXXXXXXXXXXX 664
++G++ R + E D KL+F+RG IV+ PD+ G RKLK
Sbjct: 373 SNGEKKPRAARKEGDSADEAARKLRFRRGTIVD--PDTVGEKARKLKFRRGRGLGEDKAQ 430
Query: 665 XXXXXRIYKMNSTIDAGPSNLDVESPGVKLRHQDTQEKKDAQGLFNNVIEETASKLVESR 724
R +K I N D E V LRHQD QEK DAQGLFNNVIEETASKLVE+R
Sbjct: 431 DAQVRRSFKKREDIREEEVNEDGEK--VVLRHQDVQEK-DAQGLFNNVIEETASKLVEAR 487
Query: 725 KSKVKALVGAFETVILLQD 743
KSKVKALVGAFETVI LQ+
Sbjct: 488 KSKVKALVGAFETVISLQE 506
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 27 EKTTPHYLRASTGSCHNLCKYGHKN-PFEEEKKLSTSGGRRKKLPSHLN 74
EK PHYLRASTGSCH+LCKYG + P E+ + ST +K L +LN
Sbjct: 39 EKKIPHYLRASTGSCHDLCKYGKRQIPVEKPWRSSTKKIFKKSLDDNLN 87
>AT5G15430.1 | chr5:5010180-5011616 FORWARD LENGTH=479
Length = 478
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 629 KLKFKRGKIVELQPDSNGPRKLKXXXXXXXXXXXXXXXXXXRIYKMNSTIDAGPSNLDVE 688
KL+ +RGKI++ + N PRKLK R +
Sbjct: 356 KLRIRRGKIIDFGSEGNSPRKLKFKRGKIISGADTTSKSGGRRRLKTKGTNLSNDKEQQR 415
Query: 689 SPGVKLRHQDTQEKKDAQGL-FNNVIEETASKLVESRKSKVKALVGAFETVILLQDGKPA 747
P V L+HQDT++K++++ L FN VI+ETA+KLV++RKSKVKALVGAFE+VI LQ+ +
Sbjct: 416 KPRVVLKHQDTEKKRESRVLLFNKVIKETANKLVQTRKSKVKALVGAFESVISLQEKTSS 475
Query: 748 ST 749
+T
Sbjct: 476 AT 477
>AT5G07820.1 | chr5:2498861-2500546 REVERSE LENGTH=562
Length = 561
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 611 RPKRISALEQDDDSATPYKLKFKRGKIVELQPDSNGPRKLKXXXXXXXXXXXXXXXXXXR 670
RPKRI T ++ FK+GK++E +P+ + +K +
Sbjct: 405 RPKRIGLKVTPPPPPTKQQMNFKKGKVLEPKPEDSTTTSIKFKKIVVQEPKLRTSDVNKK 464
Query: 671 IYKMNSTID-AGPSNLDVESPGVKLRHQDTQEKKDAQGLFNNVIEETASKLVESRKSKVK 729
+ + G N + + V LRH+ + KK Q LFNNVIEET +KL E RKSKVK
Sbjct: 465 KKSLKDKREGVGKINGEGKREKVVLRHRKVEVKKKLQTLFNNVIEETVNKLEEVRKSKVK 524
Query: 730 ALVGAFETVILLQD 743
ALVGAFETVI LQD
Sbjct: 525 ALVGAFETVISLQD 538
>AT5G61260.1 | chr5:24637109-24638599 FORWARD LENGTH=497
Length = 496
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 630 LKFKRGKIVELQPDSNGPRKLKXXXXXXXXXXXXXXXXXXRIYKMNSTIDAGPSNLD-VE 688
+ FK+GK+++ +P+ + PR +K + ++ + + +
Sbjct: 356 MTFKKGKVLDPKPEDSSPRWIKFKKRVVQELKTQSEGKKKNLKDRRLGVETKTDSCEGSK 415
Query: 689 SPGVKLRHQDTQEKKDAQGLFNNVIEETASKLVESRKSKVKALVGAFETVILLQD 743
V LRH+ + KK LFNNVIEET +KL + RK KVKAL+GAFETVI LQD
Sbjct: 416 REKVVLRHRKVEGKKKMITLFNNVIEETVNKLTKVRKHKVKALIGAFETVISLQD 470
>AT5G04020.1 | chr5:1081980-1086546 REVERSE LENGTH=1496
Length = 1495
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 682 PSNLDVESPGVKLRHQDTQEKKDA-QGLFNNVIEETASKLVESRKSKVKALVGAFETV 738
P N +VE+ V LRHQ+TQ KK+ + + +N ++ SKL +RK KV+ LV AFE++
Sbjct: 1433 PPNPEVEAEKVNLRHQETQNKKNGDEWMVDNALQGVVSKLTPARKLKVQLLVQAFESL 1490
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.305 0.123 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,949,197
Number of extensions: 599811
Number of successful extensions: 1502
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 7
Length of query: 771
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 665
Effective length of database: 8,200,473
Effective search space: 5453314545
Effective search space used: 5453314545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 116 (49.3 bits)