Os03g0211100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0211100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.3 | 0.217 | 10.5 | 0.226 | 0.45 | 0.476 | -0.257 | 0.0716 | -0.0621 | 5.56 | 19.37 | 2396 | -- | -- |
| 21.31 | 0.215 | 10.5 | 0.216 | 0.452 | 0.466 | -0.252 | -- | -0.0601 | 5.58 | 19.37 | 2396 | -- | -- |
| 21.46 | 0.216 | 10.5 | 0.221 | 0.449 | 0.476 | -- | 0.0538 | -0.0624 | 5.61 | 19.38 | 2411 | -- | -- |
| 21.44 | 0.216 | 10.5 | 0.226 | 0.452 | 0.444 | -- | -- | -0.0763 | 5.58 | 20.2 | 2396 | -- | -- |
| 31.67 | 0.262 | 10.5 | 0.232 | -- | 0.475 | -- | 0.0571 | -0.074 | -- | 20.3 | 2627 | -- | -- |
| 25.14 | 0.235 | 10.5 | 0.439 | 0.46 | -- | -0.314 | -- | 0.0333 | 5.29 | -- | -- | -- | -- |
| 25.38 | 0.236 | 10.5 | 0.438 | 0.458 | -- | -- | -- | 0.0348 | 5.36 | -- | -- | -- | -- |
| 31.65 | 0.262 | 10.5 | 0.212 | -- | 0.46 | -- | -- | -0.073 | -- | 20.2 | 2600 | -- | -- |
| 22.43 | 0.221 | 10.5 | -- | 0.418 | 0.507 | -- | -- | -0.0939 | 5.48 | 19.98 | 2543 | -- | -- |
| 36.34 | 0.282 | 10.5 | 0.454 | -- | -- | -- | -- | 0.0462 | -- | -- | -- | -- | -- |
| 30.45 | 0.258 | 10.5 | -- | 0.466 | -- | -- | -- | -0.014 | 5.32 | -- | -- | -- | -- |
| 32.39 | 0.265 | 10.5 | -- | -- | 0.577 | -- | -- | -0.112 | -- | 20 | 2630 | -- | -- |
| 41.77 | 0.302 | 10.5 | -- | -- | -- | -- | -- | -0.00418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.96 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 13 | 21.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 14 | 21.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 21 | 21.12 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 22 | 21.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 23 | 21.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 26 | 21.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 27 | 21.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 30 | 21.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 32 | 21.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 34 | 21.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 42 | 21.15 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 52 | 21.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 148 | 21.28 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 179 | 21.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 202 | 21.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 203 | 21.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 368 | 21.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 369 | 21.42 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 451 | 21.46 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 452 | 21.46 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 17 |
| 469 | 21.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 470 | 21.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 471 | 21.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 480 | 21.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 508 | 21.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 532 | 21.49 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 15 | 17 |
| 550 | 21.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 635 | 21.53 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 670 | 21.54 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 673 | 21.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 674 | 21.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 675 | 21.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 767 | 21.56 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 845 | 21.58 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 883 | 21.59 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 908 | 21.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |