BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0211100 Os03g0211100|AK111910
         (260 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0211100  Zinc finger, RING-type domain containing protein    411   e-115
Os03g0427100  Zinc finger, RING-type domain containing protein    259   2e-69

>Os03g0211100 Zinc finger, RING-type domain containing protein
          Length = 260

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/260 (79%), Positives = 207/260 (79%)

Query: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPXXXXXXXXXXXXREEGLECPICWESFNLVENVP 60
           MWSFASNAIAGSIRKKAQPSKCSQSNP            REEGLECPICWESFNLVENVP
Sbjct: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPDCSDDDVSSCASREEGLECPICWESFNLVENVP 60

Query: 61  YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120
           YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY
Sbjct: 61  YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120

Query: 121 FLLWMVESMNGERAKFHSPSHEERHSLCXXXXXXXXXQHHRRPAPRTESASGRERSVAGN 180
           FLLWMVESMNGERAKFHSPSHEERHSLC         QHHRRPAPRTESASGRERSVAGN
Sbjct: 121 FLLWMVESMNGERAKFHSPSHEERHSLCPSGGGPSSSQHHRRPAPRTESASGRERSVAGN 180

Query: 181 VFNTYSISASLQKIMLSFVQMTAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPS 240
           VFNTYSISASLQKIMLSFVQMTAKFP                                PS
Sbjct: 181 VFNTYSISASLQKIMLSFVQMTAKFPLVIIFLLIVLYAVPASVAVLVLYVLVTVLFALPS 240

Query: 241 FLILYFAYPSLDWLVREIFN 260
           FLILYFAYPSLDWLVREIFN
Sbjct: 241 FLILYFAYPSLDWLVREIFN 260



>Os03g0427100 Zinc finger, RING-type domain containing protein
          Length = 267

 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 158/267 (59%), Gaps = 9/267 (3%)

Query: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPXXXXXXXXXXXXREEGLECPICWESFNLVENVP 60
           MW+FAS+A    + KK  P+ C+ SN             REEGLECPICWESFN+VENVP
Sbjct: 1   MWNFASSAWGSGLGKKNTPN-CTPSNGDCSDDEASSCTSREEGLECPICWESFNIVENVP 59

Query: 61  YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120
           YVLWCGHTMCKNCILGLQWA++K PT+PIQLP F+SCPWCNLLS R++YKGNL FPRKNY
Sbjct: 60  YVLWCGHTMCKNCILGLQWAIIKVPTVPIQLPFFVSCPWCNLLSLRIIYKGNLAFPRKNY 119

Query: 121 FLLWMVESMNGERAKFHSPSHEERHSLCXXXXXXXXXQHH-----RRPAP---RTESASG 172
           FLLWMVE MNGERA+  S  H E+ +                   RRP P    T+S S 
Sbjct: 120 FLLWMVEGMNGERARSRSAIHSEQQTTWLSSSSRASGNEGYSNPIRRPLPPPVETQSPSV 179

Query: 173 RERSVAGNVFNTYSISASLQKIMLSFVQMTAKFPXXXXXXXXXXXXXXXXXXXXXXXXXX 232
              +    + N   + A L+K +   V +TAKFP                          
Sbjct: 180 NHANHGVPILNAERVQALLRKSLSFLVHLTAKFPLVFIFLLIVLYAIPASAAVLLLYILI 239

Query: 233 XXXXXXPSFLILYFAYPSLDWLVREIF 259
                 PSFLILYFAYPSLDWLVREIF
Sbjct: 240 TVLFALPSFLILYFAYPSLDWLVREIF 266



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,123,266
Number of extensions: 246393
Number of successful extensions: 627
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)