BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0211100 Os03g0211100|AK111910
         (260 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29270.1  | chr3:11235326-11236117 FORWARD LENGTH=264          239   1e-63
AT1G69330.1  | chr1:26064138-26064950 REVERSE LENGTH=271          202   2e-52
AT1G74370.1  | chr1:27958200-27958985 REVERSE LENGTH=262          192   1e-49
AT1G21650.3  | chr1:7592891-7604152 REVERSE LENGTH=1806            53   2e-07
AT1G21651.1  | chr1:7601061-7604152 REVERSE LENGTH=812             52   3e-07

>AT3G29270.1 | chr3:11235326-11236117 FORWARD LENGTH=264
          Length = 263

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 151/261 (57%), Gaps = 11/261 (4%)

Query: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPXXXXXXXXXXXXREEGLECPICWESFNLVENVP 60
           MW+ AS+ + G+I  K    +   ++             ++EGLECPICWESFN+VENVP
Sbjct: 9   MWNLASSYLTGNIGPKNDIRRPVHAHAECSDDDVSSVGSKDEGLECPICWESFNIVENVP 68

Query: 61  YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120
           YVLWCGHTMCKNCILGLQWA+VK PT P+QLPLFISCPWCNLLSFRLV++G L+FP KNY
Sbjct: 69  YVLWCGHTMCKNCILGLQWAIVKLPTHPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNY 128

Query: 121 FLLWMVESMNGERAKFHSPSHEE---RHSLCXXXXXXXXXQHHRRPAPRTESASGRERSV 177
           F+LWMVE MNGER      +  +    H+            H  +P P         RSV
Sbjct: 129 FVLWMVERMNGERRNSPGGAQTDGNNDHTRETPSPCLHNRHHRSQPEP--------SRSV 180

Query: 178 AGNVFNTYSISASLQKIMLSFVQMTAKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 237
             +     +I  SL+K ++ FVQ+TAKFP                               
Sbjct: 181 NDHRIPRDNIQTSLRKSLVFFVQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLA 240

Query: 238 XPSFLILYFAYPSLDWLVREI 258
            PSFLILYFAYP LDWLVREI
Sbjct: 241 LPSFLILYFAYPCLDWLVREI 261



>AT1G69330.1 | chr1:26064138-26064950 REVERSE LENGTH=271
          Length = 270

 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 142/277 (51%), Gaps = 29/277 (10%)

Query: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPXXXXXXXXXXXXREEGLECPICWESFNLVENVP 60
           MW FASN I GS+  K  P   +Q++              EEGLECPICWESFN+VENVP
Sbjct: 1   MWGFASNVI-GSMGLKKSPKDSAQASSQCSDDEVSNISRDEEGLECPICWESFNIVENVP 59

Query: 61  YVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120
           YVLWCGHT+C+NC+ GLQ AV++  +  I++P F+SCPWC LLSFR+VYKGNLKFPRKN+
Sbjct: 60  YVLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNF 119

Query: 121 FLLWMVESMNGERAKFHSPSHEERHSLCXXXXXXXXXQHHRRPAPRTESASGRERS---- 176
           FLLWMVES+NG+R      SH +R S                P PR   + G   S    
Sbjct: 120 FLLWMVESLNGDRT-----SHGDRTS----HGSLVTDNQQSAPTPRCSMSLGNHSSNNNL 170

Query: 177 VAGNVFNTYSISA---------------SLQKIMLSFVQMTAKFPXXXXXXXXXXXXXXX 221
           VA  +    S                  S  K +  F+  T+KFP               
Sbjct: 171 VARPLLRNQSTDLLPHHDHSNQPSRQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPG 230

Query: 222 XXXXXXXXXXXXXXXXXPSFLILYFAYPSLDWLVREI 258
                            P+ L+LYFAYP L+ LV EI
Sbjct: 231 SLIILALYFLLTILFAVPAGLVLYFAYPILERLVNEI 267



>AT1G74370.1 | chr1:27958200-27958985 REVERSE LENGTH=262
          Length = 261

 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/268 (39%), Positives = 138/268 (51%), Gaps = 19/268 (7%)

Query: 1   MWSFASNAIAGSIRKKAQPSKCSQSNPXXXXXXXXXXXXREEGLECPICWESFNLVENVP 60
           MW+ AS +I      K + +                   +EE LECPICWESFN+VENVP
Sbjct: 1   MWNLASKSIREGFISKGEEAATKPRRATLDRSGDGRKTTKEEKLECPICWESFNVVENVP 60

Query: 61  YVLWCGHTMCKNCILGLQWA-VVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKN 119
           YVLWCGHT+CK C+LGLQ A V+K   LP QLP F++CPWCN+LS RLV  G ++FP KN
Sbjct: 61  YVLWCGHTICKYCLLGLQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPSKN 120

Query: 120 YFLLWMVESMNGERAKFHSPSHEERHSLCXXXXXXXXXQHHRRPAPRTESASGRE----- 174
           ++LLWMVESMNG R++  +PS  +R +               R    + +A G E     
Sbjct: 121 FYLLWMVESMNGSRSE--APSDNKRVA-------SGQRDLRNRCDGVSNTALGDEGLLDN 171

Query: 175 ----RSVAGNVFNTYSISASLQKIMLSFVQMTAKFPXXXXXXXXXXXXXXXXXXXXXXXX 230
                 V    F T  +  S++K M     + AKFP                        
Sbjct: 172 RSWWNGVTRGFFRTGRLHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYF 231

Query: 231 XXXXXXXXPSFLILYFAYPSLDWLVREI 258
                   PSFL+LYFA+PSL+WL+REI
Sbjct: 232 FVTFALAVPSFLVLYFAFPSLNWLIREI 259



>AT1G21650.3 | chr1:7592891-7604152 REVERSE LENGTH=1806
          Length = 1805

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 19/72 (26%)

Query: 45  ECPICWESFNLVENVPYVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLS 104
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 105 FRLVYKGNLKFP 116
                   +KFP
Sbjct: 54  --------VKFP 57



>AT1G21651.1 | chr1:7601061-7604152 REVERSE LENGTH=812
          Length = 811

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 19/72 (26%)

Query: 45  ECPICWESFNLVENVPYVLWCGHTMCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLS 104
           ECP+C +S++    VP VL CGHT C+ C+            LP + P  I CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECL----------TNLPKKFPDTIRCPACTVL- 53

Query: 105 FRLVYKGNLKFP 116
                   +KFP
Sbjct: 54  --------VKFP 57



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.136    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,637,979
Number of extensions: 165218
Number of successful extensions: 580
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 5
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)