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Os03g0207900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD-40 repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0106) R2 : 0.6
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.681 (0.0269) R2dC : 0.564 R2C : 0.562
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.13 (0.0223) R2dN8 : 0.0384 R2N8 : 0.0363
σ : 0.2
deviance : 18.32
__
_____
C
peak time of C : 15.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.07 0.188 10.6 -0.163 0.534 0.237 -0.0227 -0.253 -0.167 16.8 10.01 94 -- --
16.14 0.187 10.6 -0.12 0.518 0.24 -0.077 -- -0.147 16.9 8.445 112 -- --
15.98 0.186 10.6 -0.148 0.54 0.238 -- -0.226 -0.169 16.9 8.334 101 -- --
16.16 0.187 10.6 -0.135 0.5 0.269 -- -- -0.151 17.1 8.51 112 -- --
18.37 0.2 10.6 -0.187 -- 0.568 -- -0.336 -0.134 -- 0.6692 444 -- --
17.7 0.197 10.6 -0.13 0.679 -- -0.225 -- -0.144 15.6 -- -- -- --
17.85 0.198 10.6 -0.134 0.679 -- -- -- -0.145 15.6 -- -- -- --
17.9 0.197 10.6 -0.195 -- 0.648 -- -- -0.14 -- 0.67 482 -- --
16.55 0.189 10.6 -- 0.498 0.285 -- -- -0.138 17.2 8.343 112 -- --
43.43 0.308 10.6 -0.162 -- -- -- -- -0.163 -- -- -- -- --
18.32 0.2 10.6 -- 0.681 -- -- -- -0.13 15.6 -- -- -- --
18.66 0.201 10.6 -- -- 0.642 -- -- -0.132 -- 0.7323 474 -- --
44.12 0.31 10.6 -- -- -- -- -- -0.145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.45 wind 7.0 270 < th dose independent rect. 6 19
2 12.66 wind 7.0 270 < th dose independent rect. 5 21
3 12.72 radiation 1.0 270 < th dose independent rect. 1 17
5 12.72 precipitation 0.1 270 < th dose independent rect. 6 19
6 12.72 precipitation 0.1 270 < th dose dependent rect. 6 19
11 12.86 radiation 1.0 270 < th dose dependent rect. 1 17
13 12.88 precipitation 0.1 270 < th dose independent rect. 1 5
14 12.88 precipitation 0.1 270 < th dose dependent rect. 1 5
17 12.89 wind 7.0 270 < th dose independent rect. 1 5
19 12.89 precipitation 0.1 270 < th dose independent rect. 5 21
20 12.89 precipitation 0.1 270 < th dose dependent rect. 5 21
21 12.91 wind 9.0 270 < th dose independent rect. 4 23
23 12.92 temperature 10.0 270 > th dose independent rect. 1 5
25 12.92 temperature 30.0 270 < th dose independent rect. 1 5
26 12.92 humidity 50.0 270 > th dose independent rect. 1 5
29 12.92 atmosphere 995.0 270 > th dose independent rect. 1 5
30 12.92 atmosphere 1015.0 270 < th dose independent rect. 1 5
31 12.92 radiation 20.0 270 < th dose independent rect. 1 5
34 12.92 temperature 10.0 270 > th dose independent rect. 6 19
37 12.95 radiation 40.0 270 < th dose dependent rect. 1 5
39 12.96 radiation 10.0 270 < th dose dependent rect. 1 6
43 13.00 wind 9.0 270 < th dose dependent rect. 1 5
47 13.06 wind 5.0 270 < th dose independent rect. 2 3
48 13.06 precipitation 0.1 270 < th dose independent rect. 2 3
50 13.06 precipitation 0.1 270 < th dose dependent rect. 2 3
63 13.10 wind 9.0 270 < th dose dependent rect. 2 3
67 13.11 temperature 10.0 270 > th dose independent rect. 2 3
69 13.11 temperature 30.0 270 < th dose independent rect. 2 3
70 13.11 humidity 50.0 270 > th dose independent rect. 2 3
73 13.11 atmosphere 995.0 270 > th dose independent rect. 2 3
74 13.11 atmosphere 1010.0 270 < th dose independent rect. 2 3
76 13.11 radiation 20.0 270 < th dose independent rect. 2 3
79 13.11 humidity 50.0 270 > th dose independent rect. 14 16
82 13.11 temperature 10.0 270 > th dose independent rect. 5 21
83 13.11 radiation 20.0 270 < th dose dependent rect. 2 3
86 13.12 radiation 1.0 270 < th dose independent rect. 2 3
91 13.13 radiation 1.0 270 < th dose independent rect. 1 11
95 13.13 wind 9.0 270 < th dose dependent rect. 6 19
96 13.14 radiation 1.0 270 < th dose independent rect. 1 9
100 13.15 humidity 50.0 270 > th dose dependent rect. 1 5
122 13.24 radiation 1.0 270 < th dose dependent sin 3 NA
124 13.25 wind 5.0 270 < th dose independent rect. 3 1
126 13.26 radiation 1.0 270 < th dose independent sin 3 NA
131 13.26 wind 9.0 10 < th dose independent rect. 8 19
135 13.27 wind 1.0 270 > th dose independent rect. 3 1
150 13.28 humidity 50.0 270 > th dose dependent rect. 2 3
152 13.28 radiation 1.0 270 < th dose dependent rect. 1 10
189 13.31 precipitation 0.1 270 < th dose independent rect. 3 1
194 13.31 humidity 50.0 270 > th dose independent rect. 1 17
195 13.31 precipitation 0.1 270 < th dose dependent rect. 3 1
270 13.36 temperature 10.0 270 > th dose independent rect. 3 1
272 13.36 temperature 30.0 270 < th dose independent rect. 3 1
273 13.36 humidity 50.0 270 > th dose independent rect. 3 1
276 13.36 atmosphere 995.0 270 > th dose independent rect. 3 1
277 13.36 atmosphere 1010.0 270 < th dose independent rect. 3 1
279 13.36 radiation 1.0 270 < th dose independent rect. 3 1
286 13.36 temperature 10.0 270 > th dose independent rect. 4 23
287 13.36 radiation 1.0 270 < th dose dependent rect. 3 1
294 13.37 wind 7.0 10 < th dose independent rect. 3 5
301 13.38 wind 9.0 270 < th dose dependent rect. 3 1
304 13.39 wind 7.0 270 < th dose independent rect. 18 7
313 13.40 temperature 10.0 10 > th dose independent rect. 3 5
315 13.40 temperature 30.0 10 < th dose independent rect. 3 5
316 13.40 humidity 50.0 10 > th dose independent rect. 3 5
318 13.40 atmosphere 995.0 10 > th dose independent rect. 3 5
319 13.40 atmosphere 1015.0 10 < th dose independent rect. 3 5
321 13.40 temperature 10.0 10 > th dose independent rect. 8 19
324 13.41 precipitation 0.1 270 < th dose independent rect. 18 7
325 13.41 atmosphere 995.0 270 > th dose independent rect. 6 19
327 13.41 temperature 10.0 270 > th dose dependent rect. 1 5
328 13.41 precipitation 0.1 270 < th dose dependent rect. 18 7
331 13.42 radiation 40.0 10 < th dose independent rect. 3 5
338 13.43 wind 1.0 270 > th dose independent rect. 1 5
367 13.46 precipitation 0.1 10 < th dose independent rect. 3 5
374 13.46 wind 9.0 10 < th dose dependent rect. 3 5
375 13.46 precipitation 0.1 10 < th dose dependent rect. 3 5
385 13.48 radiation 1.0 270 > th dose independent sin 3 NA
442 13.53 radiation 10.0 270 < th dose independent rect. 18 7
455 13.54 humidity 50.0 270 > th dose dependent rect. 3 1
456 13.54 temperature 10.0 270 > th dose dependent rect. 2 3
463 13.55 radiation 40.0 270 < th dose independent rect. 13 17
469 13.55 wind 9.0 270 < th dose dependent rect. 17 8
475 13.56 temperature 10.0 270 > th dose independent rect. 18 7
476 13.56 humidity 50.0 270 > th dose independent rect. 18 7
484 13.56 temperature 10.0 270 > th dose independent rect. 1 17
485 13.56 atmosphere 1015.0 270 < th dose independent rect. 1 17
494 13.56 radiation 30.0 270 < th dose dependent rect. 18 7
530 13.58 atmosphere 995.0 10 > th dose independent rect. 8 19
534 13.58 radiation 20.0 43200 < th dose dependent rect. 21 7
553 13.60 radiation 1.0 270 > th dose independent rect. 17 22
554 13.60 atmosphere 995.0 270 > th dose dependent rect. 1 5
565 13.61 atmosphere 995.0 270 > th dose independent rect. 18 7
567 13.61 humidity 50.0 10 > th dose dependent rect. 3 5
576 13.63 wind 9.0 1440 < th dose independent rect. 4 5
577 13.63 temperature 10.0 1440 > th dose independent rect. 4 5
580 13.63 humidity 50.0 1440 > th dose independent rect. 4 5
582 13.63 atmosphere 995.0 1440 > th dose independent rect. 4 5
583 13.63 atmosphere 1015.0 1440 < th dose independent rect. 4 5
587 13.63 temperature 30.0 270 < th dose independent rect. 19 6
596 13.63 wind 9.0 270 < th dose independent rect. 6 8
602 13.63 temperature 10.0 1440 > th dose independent rect. 9 19
629 13.64 precipitation 0.1 270 < th dose independent rect. 1 17
635 13.64 precipitation 0.1 270 < th dose dependent rect. 1 17
698 13.67 atmosphere 995.0 270 > th dose dependent rect. 2 3
704 13.68 humidity 50.0 270 > th dose independent rect. 6 8
706 13.68 wind 1.0 270 > th dose independent rect. 6 19
731 13.70 precipitation 0.1 270 < th dose independent rect. 6 8
733 13.70 precipitation 0.1 270 < th dose dependent rect. 6 8
737 13.71 atmosphere 995.0 270 > th dose independent rect. 1 17
747 13.72 temperature 10.0 270 > th dose independent rect. 6 8
748 13.72 atmosphere 995.0 270 > th dose independent rect. 6 8
749 13.72 atmosphere 1015.0 270 < th dose independent rect. 6 8
750 13.72 radiation 1.0 270 > th dose independent rect. 6 8
752 13.72 temperature 10.0 270 > th dose independent rect. 14 16
757 13.72 radiation 40.0 270 < th dose dependent rect. 15 15
797 13.75 temperature 10.0 270 > th dose dependent rect. 3 1
800 13.75 atmosphere 995.0 10 > th dose dependent rect. 3 5
852 13.79 wind 9.0 270 < th dose independent rect. 1 17
866 13.80 atmosphere 995.0 270 > th dose independent rect. 5 21
892 13.82 wind 7.0 270 < th dose independent rect. 20 15
901 13.82 atmosphere 995.0 270 > th dose dependent rect. 3 1
902 13.82 temperature 10.0 10 > th dose dependent rect. 3 5
922 13.84 temperature 30.0 270 < th dose dependent rect. 2 3
926 13.84 humidity 50.0 90 > th dose dependent rect. 20 7
932 13.85 atmosphere 1015.0 270 < th dose independent rect. 6 19