BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0207900 Os03g0207900|AK111713
(570 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21060.1 | chr3:7377822-7379942 FORWARD LENGTH=548 565 e-161
>AT3G21060.1 | chr3:7377822-7379942 FORWARD LENGTH=548
Length = 547
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 297/530 (56%), Positives = 369/530 (69%), Gaps = 19/530 (3%)
Query: 1 MNVPIVDPLQGDFPETIEEFLQYGSMKCIAFNRRGTLLAAGCANGTCVIWDFETRGIARE 60
MN PI+DPLQGDFPE IEE+L++G +KC+AFN RG+LLAAGCA+G CVIWDFETRGIA+E
Sbjct: 1 MNAPIIDPLQGDFPEVIEEYLEHGVIKCVAFNHRGSLLAAGCADGGCVIWDFETRGIAKE 60
Query: 61 LHDKDCTAPITSVAWSKYGHHLLASATDKSLTLWHVVNEKKIARITLQQTPLSVRLHPGG 120
+ D DC+A ITSV+WSKYGH LL SA DKSLTLW V +KIAR LQQTPL RL+P G
Sbjct: 61 IRDNDCSAAITSVSWSKYGHRLLVSAADKSLTLWDVSTGEKIARTILQQTPLQARLNP-G 119
Query: 121 PSTPSICLACPLSSAPILVDLNTGSTTVLPAFLSDNGNLPAPNTRNKFSDGSPPFTPTAA 180
S+PS+CLACPLSSAP++VD + TT+LP + + ++ AP R+K + +PPF+P AA
Sbjct: 120 LSSPSLCLACPLSSAPMIVDFDIDCTTLLPVSVPEMPDVLAPPQRSKCPESNPPFSPAAA 179
Query: 181 TFDKYGDLIYVGNSKGEILIIDSKSIKVHAVIPIPGGTVVKDIVFSRDGRYLLTNSNDRV 240
F+K GDL+Y+GNSKGEILI+D KS++V A++ G VK+IVFSR+G+YLLTNS+DR
Sbjct: 180 CFNKCGDLVYIGNSKGEILIVDYKSVRVLALVSASGAAPVKNIVFSRNGQYLLTNSHDRT 239
Query: 241 IRVYDNLLPVKGSGEEIEKISSNNISYESHYEKLKANGASCLAISCELLDAIAKIPWKAP 300
IR+Y+NLLP K + +E + NI EK+K G+ CL + E D++ K+ WKAP
Sbjct: 240 IRIYENLLPAKNVLKSLEDL-GKNIDGLDGIEKMKTVGSKCLTLFREFQDSVTKMHWKAP 298
Query: 301 CFSGDSEWIVGASASKGEHRLCIWNRSGRLVKILEGPKEALIDIAWHPVDPTIVSVSVAG 360
CFSGD EW+VG SA KGEH++ IW+R+G LVKILEGPKEALID+AWHPV P IVSVS+AG
Sbjct: 299 CFSGDGEWVVGGSACKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIIVSVSLAG 358
Query: 361 LAYIWAKEHVENWSAFAPDFVXXXXXXXXXXXXXXFDLNAYVEKAEEQLVNEDEYVDIET 420
L YIWAK++ ENWSAFAPDF FDL EK + VNEDE VDI+T
Sbjct: 359 LVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKVLDVNEDEEVDIDT 418
Query: 421 YDKNXXXXXXXXXXXXXMELIYLAAIPIPDTPDEQPDKCLGSSSKLEDSNHSDSPSSLDA 480
+K+ EL YL A PIPDT D+Q + L S KL + S SP+S +A
Sbjct: 419 VEKDAFSDSDMSVE----ELRYLPAEPIPDTNDQQDN--LVESIKLIEGQISASPASEEA 472
Query: 481 VQNGQAIPPASSPMEVDNSTAEEPAEAVNSKRRRRLSAKGLELQQAEKGK 530
QNG ASSP AEE E KR+R+ S K +EL QAEK K
Sbjct: 473 GQNGHH---ASSPQ------AEEMGE-TRGKRKRKPSEKAMEL-QAEKAK 511
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,425,718
Number of extensions: 597195
Number of successful extensions: 2067
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2085
Number of HSP's successfully gapped: 3
Length of query: 570
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 466
Effective length of database: 8,255,305
Effective search space: 3846972130
Effective search space used: 3846972130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)