BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0207900 Os03g0207900|AK111713
(570 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0207900 WD-40 repeat containing protein 1107 0.0
>Os03g0207900 WD-40 repeat containing protein
Length = 570
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/570 (95%), Positives = 543/570 (95%)
Query: 1 MNVPIVDPLQGDFPETIEEFLQYGSMKCIAFNRRGTLLAAGCANGTCVIWDFETRGIARE 60
MNVPIVDPLQGDFPETIEEFLQYGSMKCIAFNRRGTLLAAGCANGTCVIWDFETRGIARE
Sbjct: 1 MNVPIVDPLQGDFPETIEEFLQYGSMKCIAFNRRGTLLAAGCANGTCVIWDFETRGIARE 60
Query: 61 LHDKDCTAPITSVAWSKYGHHLLASATDKSLTLWHVVNEKKIARITLQQTPLSVRLHPGG 120
LHDKDCTAPITSVAWSKYGHHLLASATDKSLTLWHVVNEKKIARITLQQTPLSVRLHPGG
Sbjct: 61 LHDKDCTAPITSVAWSKYGHHLLASATDKSLTLWHVVNEKKIARITLQQTPLSVRLHPGG 120
Query: 121 PSTPSICLACPLSSAPILVDLNTGSTTVLPAFLSDNGNLPAPNTRNKFSDGSPPFTPTAA 180
PSTPSICLACPLSSAPILVDLNTGSTTVLPAFLSDNGNLPAPNTRNKFSDGSPPFTPTAA
Sbjct: 121 PSTPSICLACPLSSAPILVDLNTGSTTVLPAFLSDNGNLPAPNTRNKFSDGSPPFTPTAA 180
Query: 181 TFDKYGDLIYVGNSKGEILIIDSKSIKVHAVIPIPGGTVVKDIVFSRDGRYLLTNSNDRV 240
TFDKYGDLIYVGNSKGEILIIDSKSIKVHAVIPIPGGTVVKDIVFSRDGRYLLTNSNDRV
Sbjct: 181 TFDKYGDLIYVGNSKGEILIIDSKSIKVHAVIPIPGGTVVKDIVFSRDGRYLLTNSNDRV 240
Query: 241 IRVYDNLLPVKGSGEEIEKISSNNISYESHYEKLKANGASCLAISCELLDAIAKIPWKAP 300
IRVYDNLLPVKGSGEEIEKISSNNISYESHYEKLKANGASCLAISCELLDAIAKIPWKAP
Sbjct: 241 IRVYDNLLPVKGSGEEIEKISSNNISYESHYEKLKANGASCLAISCELLDAIAKIPWKAP 300
Query: 301 CFSGDSEWIVGASASKGEHRLCIWNRSGRLVKILEGPKEALIDIAWHPVDPTIVSVSVAG 360
CFSGDSEWIVGASASKGEHRLCIWNRSGRLVKILEGPKEALIDIAWHPVDPTIVSVSVAG
Sbjct: 301 CFSGDSEWIVGASASKGEHRLCIWNRSGRLVKILEGPKEALIDIAWHPVDPTIVSVSVAG 360
Query: 361 LAYIWAKEHVENWSAFAPDFVXXXXXXXXXXXXXXFDLNAYVEKAEEQLVNEDEYVDIET 420
LAYIWAKEHVENWSAFAPDFV FDLNAYVEKAEEQLVNEDEYVDIET
Sbjct: 361 LAYIWAKEHVENWSAFAPDFVELEENEEYVEREDEFDLNAYVEKAEEQLVNEDEYVDIET 420
Query: 421 YDKNXXXXXXXXXXXXXMELIYLAAIPIPDTPDEQPDKCLGSSSKLEDSNHSDSPSSLDA 480
YDKN MELIYLAAIPIPDTPDEQPDKCLGSSSKLEDSNHSDSPSSLDA
Sbjct: 421 YDKNSTFSDLDDSSSTTMELIYLAAIPIPDTPDEQPDKCLGSSSKLEDSNHSDSPSSLDA 480
Query: 481 VQNGQAIPPASSPMEVDNSTAEEPAEAVNSKRRRRLSAKGLELQQAEKGKKPTTKNKSNG 540
VQNGQAIPPASSPMEVDNSTAEEPAEAVNSKRRRRLSAKGLELQQAEKGKKPTTKNKSNG
Sbjct: 481 VQNGQAIPPASSPMEVDNSTAEEPAEAVNSKRRRRLSAKGLELQQAEKGKKPTTKNKSNG 540
Query: 541 KSPGSNGKQLEPANGNSSAVDDEATEDDEI 570
KSPGSNGKQLEPANGNSSAVDDEATEDDEI
Sbjct: 541 KSPGSNGKQLEPANGNSSAVDDEATEDDEI 570
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,187,180
Number of extensions: 946359
Number of successful extensions: 2988
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2988
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 464
Effective length of database: 11,501,117
Effective search space: 5336518288
Effective search space used: 5336518288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)