Os03g0190100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UbiA prenyltransferase family protein.
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Os03g0190100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UbiA prenyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.15 | 0.421 | 11.1 | -1.19 | 1.71 | 0.735 | -0.595 | -0.605 | -0.373 | 20.2 | 25.02 | 10 | -- | -- |
| 80.51 | 0.421 | 11.1 | -1.29 | 1.69 | 0.813 | -0.702 | -- | -0.414 | 20.3 | 23.98 | 2 | -- | -- |
| 81.05 | 0.423 | 11.1 | -1.15 | 1.7 | 0.728 | -- | -0.783 | -0.367 | 20.2 | 25.02 | 10 | -- | -- |
| 82.02 | 0.422 | 11.1 | -1.27 | 1.69 | 0.834 | -- | -- | -0.418 | 20.3 | 23.71 | 2 | -- | -- |
| 237.63 | 0.718 | 11.1 | -1.15 | -- | 1.26 | -- | -0.289 | -0.362 | -- | 23.68 | 2 | -- | -- |
| 89.84 | 0.444 | 11.2 | -1.47 | 1.75 | -- | -0.718 | -- | -0.544 | 20.6 | -- | -- | -- | -- |
| 91.5 | 0.448 | 11.2 | -1.45 | 1.75 | -- | -- | -- | -0.544 | 20.6 | -- | -- | -- | -- |
| 237.6 | 0.721 | 11.1 | -1.18 | -- | 1.31 | -- | -- | -0.373 | -- | 23.5 | 2 | -- | -- |
| 120.43 | 0.511 | 11.1 | -- | 1.68 | 1.29 | -- | -- | -0.203 | 20 | 24.17 | 3 | -- | -- |
| 263.14 | 0.758 | 11.1 | -1.45 | -- | -- | -- | -- | -0.56 | -- | -- | -- | -- | -- |
| 146.75 | 0.567 | 11.1 | -- | 1.75 | -- | -- | -- | -0.383 | 20.5 | -- | -- | -- | -- |
| 271.79 | 0.77 | 11 | -- | -- | 1.72 | -- | -- | -0.194 | -- | 23.5 | 2 | -- | -- |
| 318.94 | 0.834 | 11.1 | -- | -- | -- | -- | -- | -0.399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 3 | 75.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 10 | 76.74 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 11 | 76.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 15 | 76.96 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 17 | 77.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 26 | 77.40 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 8 |
| 27 | 77.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 19 | 13 |
| 28 | 77.44 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 30 | 77.45 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 10 |
| 45 | 77.73 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 58 | 77.88 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 72 | 77.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 82 | 77.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 120 | 78.10 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 132 | 78.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 136 | 78.22 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 138 | 78.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 140 | 78.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 164 | 78.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 22 |
| 169 | 78.39 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 170 | 78.40 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 175 | 78.43 | radiation | 30.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 182 | 78.48 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 208 | 78.52 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 232 | 78.59 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 269 | 78.80 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 287 | 78.89 | wind | 3.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 291 | 78.90 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 297 | 78.94 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 298 | 78.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 317 | 79.04 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 334 | 79.09 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 381 | 79.22 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 390 | 79.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 437 | 79.29 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 438 | 79.29 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 477 | 79.40 | radiation | 20.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 525 | 79.45 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 531 | 79.48 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 532 | 79.48 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 534 | 79.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 535 | 79.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 576 | 79.57 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 18 |
| 582 | 79.57 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 588 | 79.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 595 | 79.61 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 605 | 79.63 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 617 | 79.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 642 | 79.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 643 | 79.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 648 | 79.73 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 9 |
| 651 | 79.74 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 656 | 79.75 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 661 | 79.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 663 | 79.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 664 | 79.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 667 | 79.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 668 | 79.76 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 670 | 79.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 676 | 79.76 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 21 |
| 679 | 79.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 713 | 79.83 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 715 | 79.83 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 716 | 79.83 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 718 | 79.83 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 719 | 79.83 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 720 | 79.83 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 729 | 79.84 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 8 |
| 775 | 79.88 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 797 | 79.89 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 8 |
| 816 | 79.92 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 853 | 79.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 18 |
| 865 | 79.99 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 890 | 80.02 | wind | 7.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 897 | 80.03 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 899 | 80.03 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 957 | 80.09 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 958 | 80.09 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 959 | 80.09 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 962 | 80.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 963 | 80.09 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 970 | 80.09 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 18 |
| 973 | 80.09 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 978 | 80.09 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |