BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0190100 Os03g0190100|AK066332
         (369 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60600.2  | chr1:22324807-22326759 REVERSE LENGTH=383          354   5e-98

>AT1G60600.2 | chr1:22324807-22326759 REVERSE LENGTH=383
          Length = 382

 Score =  354 bits (908), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/308 (61%), Positives = 223/308 (72%), Gaps = 3/308 (0%)

Query: 57  DDVELSRGTLLWRAAKLPIYSVALVPLTVGSACAYHHVGSFFGKRYFVLLVASVLVITWL 116
            + E+ R  L+WRA KLP+YSVALVPLTVG++ AY   G F  +RY  LL++S+L+ITWL
Sbjct: 78  QEEEIPRAKLIWRAIKLPMYSVALVPLTVGASAAYLETGLFLARRYVTLLLSSILIITWL 137

Query: 117 NLSNDVYDSDTGADKNKKESVVNIVGSRTMTQYAANISLLFGFMGLFWAFAQAGDARFIL 176
           NLSNDVYD DTGADKNK ESVVN+VGSRT T  AA  SL  G  GL W    A + R IL
Sbjct: 138 NLSNDVYDFDTGADKNKMESVVNLVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAIL 197

Query: 177 SVTCAIICGYVYQCPPFRLSYRGLGEPLCFAAFGPLATTAFYFSNSSRNISSGTALLPLS 236
            +  AI+CGYVYQCPPFRLSY+GLGEPLCFAAFGP ATTAFY    S   SS    LPLS
Sbjct: 198 LLASAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS---SSEMRHLPLS 254

Query: 237 KTVIASSILVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRIGTKTGSRXXXXXXXXXXXX 296
             V++SS+LVG TT+LILFCSHFHQ+DGD AVGK SPLVR+GT+ G+             
Sbjct: 255 GRVLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSM 314

Query: 297 XAAFGMSKSLPSACTVLCALTLPVGKWVVDYVLKNHEDNSKIFMAKYYCVRLHALFGMAL 356
               G+++ LP  CT++C LTLPVG  V  YV K+H+DN KIFMAKYYCVRLHAL G AL
Sbjct: 315 LLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAAL 374

Query: 357 ASGLVLAR 364
           + GLV+AR
Sbjct: 375 SLGLVIAR 382



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,605,320
Number of extensions: 241449
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,364,969
Effective search space: 2250176661
Effective search space used: 2250176661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)