BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0190100 Os03g0190100|AK066332
         (369 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0190100  UbiA prenyltransferase family protein               635   0.0  

>Os03g0190100 UbiA prenyltransferase family protein
          Length = 369

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/369 (86%), Positives = 320/369 (86%)

Query: 1   MPLAGIALAPLFVSHLAPXXXXXXXXXXXXXXXXXXXXXXXQCXXXXXXXXXXXXXDDVE 60
           MPLAGIALAPLFVSHLAP                       QC             DDVE
Sbjct: 1   MPLAGIALAPLFVSHLAPPHHRRSSVASAAAAAARRRPRAVQCSATATAASGEGAGDDVE 60

Query: 61  LSRGTLLWRAAKLPIYSVALVPLTVGSACAYHHVGSFFGKRYFVLLVASVLVITWLNLSN 120
           LSRGTLLWRAAKLPIYSVALVPLTVGSACAYHHVGSFFGKRYFVLLVASVLVITWLNLSN
Sbjct: 61  LSRGTLLWRAAKLPIYSVALVPLTVGSACAYHHVGSFFGKRYFVLLVASVLVITWLNLSN 120

Query: 121 DVYDSDTGADKNKKESVVNIVGSRTMTQYAANISLLFGFMGLFWAFAQAGDARFILSVTC 180
           DVYDSDTGADKNKKESVVNIVGSRTMTQYAANISLLFGFMGLFWAFAQAGDARFILSVTC
Sbjct: 121 DVYDSDTGADKNKKESVVNIVGSRTMTQYAANISLLFGFMGLFWAFAQAGDARFILSVTC 180

Query: 181 AIICGYVYQCPPFRLSYRGLGEPLCFAAFGPLATTAFYFSNSSRNISSGTALLPLSKTVI 240
           AIICGYVYQCPPFRLSYRGLGEPLCFAAFGPLATTAFYFSNSSRNISSGTALLPLSKTVI
Sbjct: 181 AIICGYVYQCPPFRLSYRGLGEPLCFAAFGPLATTAFYFSNSSRNISSGTALLPLSKTVI 240

Query: 241 ASSILVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRIGTKTGSRXXXXXXXXXXXXXAAF 300
           ASSILVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRIGTKTGSR             AAF
Sbjct: 241 ASSILVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRIGTKTGSRLVTLGVVTLYVLLAAF 300

Query: 301 GMSKSLPSACTVLCALTLPVGKWVVDYVLKNHEDNSKIFMAKYYCVRLHALFGMALASGL 360
           GMSKSLPSACTVLCALTLPVGKWVVDYVLKNHEDNSKIFMAKYYCVRLHALFGMALASGL
Sbjct: 301 GMSKSLPSACTVLCALTLPVGKWVVDYVLKNHEDNSKIFMAKYYCVRLHALFGMALASGL 360

Query: 361 VLARNGTLV 369
           VLARNGTLV
Sbjct: 361 VLARNGTLV 369



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,170,230
Number of extensions: 359474
Number of successful extensions: 922
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)