Os03g0161500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0161500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.41 | 0.365 | 11.7 | -1.66 | 1.29 | 0.999 | 1.24 | -0.64 | 0.0267 | 0.899 | 21.32 | 1376 | -- | -- |
| 61.31 | 0.365 | 11.6 | -1.5 | 1.3 | 1.04 | 1.17 | -- | 0.0612 | 0.868 | 21.4 | 1373 | -- | -- |
| 66.38 | 0.379 | 11.7 | -1.67 | 1.32 | 0.989 | -- | -0.567 | 0.0215 | 0.994 | 21.4 | 1511 | -- | -- |
| 67.26 | 0.382 | 11.6 | -1.54 | 1.32 | 1.02 | -- | -- | 0.0536 | 1.03 | 21.43 | 1490 | -- | -- |
| 148.19 | 0.567 | 11.7 | -1.49 | -- | 1.19 | -- | -0.329 | -0.0451 | -- | 24.7 | 952 | -- | -- |
| 92.23 | 0.45 | 11.6 | -1.07 | 1.34 | -- | 1.1 | -- | 0.351 | 0.945 | -- | -- | -- | -- |
| 97.27 | 0.462 | 11.6 | -1.11 | 1.34 | -- | -- | -- | 0.345 | 1.06 | -- | -- | -- | -- |
| 148.28 | 0.567 | 11.7 | -1.46 | -- | 1.29 | -- | -- | -0.0878 | -- | 25.12 | 978 | -- | -- |
| 117.71 | 0.505 | 11.6 | -- | 1.26 | 0.543 | -- | -- | 0.328 | 0.984 | 22.4 | 1218 | -- | -- |
| 209.01 | 0.676 | 11.6 | -1.06 | -- | -- | -- | -- | 0.371 | -- | -- | -- | -- | -- |
| 129.99 | 0.533 | 11.5 | -- | 1.32 | -- | -- | -- | 0.469 | 1.03 | -- | -- | -- | -- |
| 200.79 | 0.66 | 11.6 | -- | -- | 0.976 | -- | -- | 0.174 | -- | 25.2 | 954 | -- | -- |
| 238.84 | 0.721 | 11.5 | -- | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 6 | 57.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 26 | 58.58 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 30 | 58.68 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 20 |
| 32 | 58.77 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 52 | 59.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 53 | 59.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 107 | 60.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 111 | 60.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 159 | 60.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 256 | 60.52 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 337 | 60.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 447 | 61.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 450 | 61.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 488 | 61.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 610 | 61.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 724 | 61.52 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 8 |
| 738 | 61.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 21 |