BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0161500 Os03g0161500|AK059911
         (139 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0161500  Conserved hypothetical protein                      223   4e-59

>Os03g0161500 Conserved hypothetical protein
          Length = 139

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 34  DDFFSPLSPLLAPVIGSMCKTVACGKGNCTAASGFPGYRCECEPGWKQMHVGDQASFLPC 93
           DDFFSPLSPLLAPVIGSMCKTVACGKGNCTAASGFPGYRCECEPGWKQMHVGDQASFLPC
Sbjct: 34  DDFFSPLSPLLAPVIGSMCKTVACGKGNCTAASGFPGYRCECEPGWKQMHVGDQASFLPC 93

Query: 94  VIPNCSIDRACSNTIAPAPAPLPSPKNFSLPTDRNYCNWLLFRFSF 139
           VIPNCSIDRACSNTIAPAPAPLPSPKNFSLPTDRNYCNWLLFRFSF
Sbjct: 94  VIPNCSIDRACSNTIAPAPAPLPSPKNFSLPTDRNYCNWLLFRFSF 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,642,358
Number of extensions: 214941
Number of successful extensions: 1585
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)