BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0161500 Os03g0161500|AK059911
         (139 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14746.1  | chr4:8462720-8464326 REVERSE LENGTH=213             75   1e-14

>AT4G14746.1 | chr4:8462720-8464326 REVERSE LENGTH=213
          Length = 212

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 40  LSPLLAPVIGSMCKTVACGKGNCTAASGFP-GYRCECEPGWKQMHVGDQASFLPCVIPNC 98
           LSPL APV  ++CK V CGKG C A S     Y CECE GWKQ        FLPC+ PNC
Sbjct: 27  LSPLFAPVYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQFD--QHLKFLPCITPNC 84

Query: 99  SIDRACSNTIAPAPAPLPSPKNFSLPTDRNYCNWL 133
           + D  C    +PA  P P PK+ ++ +  + C W+
Sbjct: 85  TFDLTCGEAASPA-QPKPPPKD-NITSFFDPCQWM 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,828,269
Number of extensions: 120576
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)