Os03g0152800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0152800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.65 | 0.186 | 9.97 | 0.683 | 0.452 | -0.367 | -0.59 | 1.24 | 0.179 | 3.72 | 25.69 | 1124 | -- | -- |
| 17.26 | 0.193 | 10 | 0.407 | 0.392 | -0.213 | -0.374 | -- | 0.077 | 3.56 | 25.4 | 887 | -- | -- |
| 16.52 | 0.189 | 9.97 | 0.693 | 0.437 | -0.375 | -- | 1.2 | 0.19 | 3.77 | 26.1 | 1175 | -- | -- |
| 17.19 | 0.193 | 10 | 0.394 | 0.321 | -0.214 | -- | -- | 0.0351 | 4.31 | 23.6 | 135 | -- | -- |
| 20.82 | 0.213 | 10 | 0.468 | -- | -0.329 | -- | 0.421 | 0.11 | -- | 26.09 | 310 | -- | -- |
| 19.03 | 0.204 | 10 | 0.265 | 0.399 | -- | -0.48 | -- | -0.0287 | 4.32 | -- | -- | -- | -- |
| 19.66 | 0.208 | 10 | 0.27 | 0.396 | -- | -- | -- | -0.0261 | 4.34 | -- | -- | -- | -- |
| 20.19 | 0.209 | 10 | 0.372 | -- | -0.324 | -- | -- | 0.122 | -- | 25.23 | 271 | -- | -- |
| 19.83 | 0.207 | 10 | -- | 0.338 | -0.159 | -- | -- | 0.015 | 4.57 | 24.2 | 95 | -- | -- |
| 28.12 | 0.248 | 10 | 0.285 | -- | -- | -- | -- | -0.0156 | -- | -- | -- | -- | -- |
| 21.58 | 0.217 | 10 | -- | 0.402 | -- | -- | -- | -0.0561 | 4.32 | -- | -- | -- | -- |
| 23.69 | 0.227 | 10 | -- | -- | -0.285 | -- | -- | 0.064 | -- | 25.24 | 229 | -- | -- |
| 30.26 | 0.257 | 10 | -- | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 4 | 15.78 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 15.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 17 | 15.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 18 | 15.86 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 30 | 15.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 34 | 15.91 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 19 |
| 36 | 15.92 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 43 | 15.92 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 53 | 15.94 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 83 | 16.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 107 | 16.02 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 147 | 16.07 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 148 | 16.07 | temperature | 20 | 90 | > th | dose dependent | sin | 9 | NA |
| 160 | 16.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 162 | 16.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 195 | 16.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 209 | 16.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 212 | 16.12 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 227 | 16.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 290 | 16.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 317 | 16.19 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 327 | 16.20 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 328 | 16.20 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 344 | 16.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 359 | 16.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 385 | 16.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 397 | 16.23 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 451 | 16.25 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 467 | 16.25 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 501 | 16.27 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 502 | 16.27 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 519 | 16.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 525 | 16.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 536 | 16.28 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 21 |
| 552 | 16.29 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 576 | 16.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 608 | 16.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 623 | 16.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 643 | 16.31 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 692 | 16.33 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 711 | 16.33 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 22 |
| 713 | 16.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 714 | 16.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 718 | 16.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 722 | 16.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 730 | 16.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 738 | 16.34 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 20 |
| 747 | 16.34 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 751 | 16.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 806 | 16.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 837 | 16.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 841 | 16.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 909 | 16.37 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 937 | 16.38 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 943 | 16.38 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 17 |