BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0152800 Os03g0152800|AK066205
         (859 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17900.1  | chr3:6128983-6133069 FORWARD LENGTH=839            610   e-174

>AT3G17900.1 | chr3:6128983-6133069 FORWARD LENGTH=839
          Length = 838

 Score =  610 bits (1573), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 387/903 (42%), Positives = 516/903 (57%), Gaps = 113/903 (12%)

Query: 1   MNFLYRTSQPVAPELPRIPEQDQQRDSLQ---KPVTTLEGLIADD--PYHPSPEDEDTD- 54
           MNFL R++       P I              KP  TLEGLIA++  P +PS  DED D 
Sbjct: 1   MNFLLRSASSATHRPPVIEPPATPPQPPPETAKPGVTLEGLIAEEHFPQYPS-VDEDLDR 59

Query: 55  ----NGDVDIGGDSADADSKNSVPTGKHTDVLDDEGWITIPNKELPDNWNDLSDMLQLQP 110
               +GD+D  G+S +A S  S    + +DV +++GWI IP KE+PDNW++  D+  L+ 
Sbjct: 60  VGDGSGDLDGNGES-NAKSGGS-GMERFSDVSEEQGWIAIPYKEIPDNWSESVDIHSLRS 117

Query: 111 LDRPFLFPGEQVHILACMSASKQETQVISPFRIAAVMSKNGNSLQYSTNKSSHATENGDS 170
           LDR F+FPGEQ+ ILAC+S SK +T++I+PF++A VMS+ G        +     +NGD 
Sbjct: 118 LDRSFVFPGEQIQILACLSESKGDTEIITPFKVAEVMSRTGQ-------RKVSDKQNGD- 169

Query: 171 NVKNGENGSQVVEDDMQSVELNSEMSPMTQDDMQNVELDNEMSPSKQDDMQNVELNNEIS 230
                      + D   +   + EMSP  Q   QN +     SP K           E  
Sbjct: 170 -----------MSDGASTPSGDGEMSPDAQFATQNGD-----SPCK-----------ESL 202

Query: 231 PSKQDILETESLLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQ 290
            S++D+ + ES+LR+EDHK++ E +L RF+ S+FFVRIAES EPLWS K   V+      
Sbjct: 203 DSQKDLSDGESILRMEDHKRRTEDLLSRFQKSHFFVRIAESGEPLWSKKSSLVAD----- 257

Query: 291 SYSDNQENNKGSRSN-AYNTISDKGVFDGSTSGGIARGTARCYALQNGDIXXXXXXXXXX 349
             ++  E  K ++S    +   D+G FD + SGG+AR  A+C AL NGDI          
Sbjct: 258 --TEMDEERKRTKSRPCVSAFVDRGDFDPNVSGGVARSKAKCCALPNGDIVVSLQVYIVD 315

Query: 350 NKMEAPVLEVLQFEKSSSSNYITKNLVNGLSSGDEDPCQELLSW------XXXXXXXXXX 403
              E P++E+LQFEK    +   +N        D+DP   LL W                
Sbjct: 316 CPKE-PIIEILQFEKHQDQDQNPEN--------DKDPYGNLLKWLIPLDNTISQQPRSLP 366

Query: 404 XXXXXXXXXXSASHKQSYSA-SGSQIFSLSHFRSYSMPSASSTQPPNIRP--PPI---SE 457
                     S +HK + S+ SGSQ+FS  HFRSYSM    S  PPN  P   PI   S 
Sbjct: 367 PPITPSPSISSTAHKPAISSTSGSQLFSFGHFRSYSM----SALPPNTAPVTGPIKTQSS 422

Query: 458 SQEF-VPEKPAKTPDIINDGQ-------LSFRGVPLEPERYSVRCGLEGVYLPGKRWRRK 509
              F + +  + +   + +GQ       LSFRGV LE +R+SVRCGLEG+ +PG+RWRRK
Sbjct: 423 KPSFDIEDWDSYSGQTVRNGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGRRWRRK 482

Query: 510 VEIIQPIEVHSFAAKCTSENLLCVLIKNISPQHVKDIVVLVDAITIVFEEASKGGAPLSL 569
           +EIIQPIE++SFAA C +++LLCV IKN++P H  DIV+ +DAITIVFEEA K  +P S+
Sbjct: 483 LEIIQPIEINSFAADCNTDDLLCVQIKNVAPTHAPDIVIYIDAITIVFEEAGKNASPSSV 542

Query: 570 PIASIEVGHGHSLPNLALRRGEEHSFILKPATMSFRDRR----TNNDAPLTLSLPKMNGT 625
           PIA IE G+ HSLPNL LR+GEEHSFI+KPA     + +     N     +LSLP +N  
Sbjct: 543 PIACIEAGNEHSLPNLTLRKGEEHSFIVKPAFSVGSNLKPSAARNKLKSSSLSLPTVNFE 602

Query: 626 ATNVSLAKVGETIGSLMDQYAVLVSYRCNYTESKLFFKQATSWRPCVASDLMISVSSELS 685
                L+          DQYAV+VS RCNYTES+LFFKQ T WRP V+ DLMISV+SE+S
Sbjct: 603 RKGSGLSG---------DQYAVMVSCRCNYTESRLFFKQRTKWRPRVSRDLMISVASEMS 653

Query: 686 LRNPISSARVPQLPVQVLTLEATNMTSENLTVTVLAPEAXXX-XXXXXXXXAPTTPNSSY 744
                   R  QLPVQ+LTL+A+N+TSE+L++TVLAP +             PTTP S +
Sbjct: 654 GEPCGPHGRASQLPVQILTLQASNLTSEDLSLTVLAPASFTSPPTVVSLNSTPTTPISPF 713

Query: 745 DNLNESVRRSGLGKHRAGFRRMNSVLA---------GSPKESDNGGNRISTSG-GCTHLW 794
              ++   R    K     R+  S+            +  ES N  + +  SG GCTHLW
Sbjct: 714 LGFSDFTERVQNEKRNTTVRKQQSLPPIPLETRTENNTNGESSNPSDVVPKSGLGCTHLW 773

Query: 795 LQSAVPLGCIPARSSTTVKLELLPLTDGIITLDTLQITIREKGLTYIPEHSLEIYASAAN 854
           LQS VPLGC+P++S+ T+KLELLPLTDGIITLDTLQI  +EKG  YIPE SL+I A+++ 
Sbjct: 774 LQSRVPLGCVPSKSTATIKLELLPLTDGIITLDTLQIHAKEKGRRYIPEQSLKINATSSI 833

Query: 855 STG 857
           S+G
Sbjct: 834 SSG 836



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,526,714
Number of extensions: 818965
Number of successful extensions: 2677
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2669
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 752
Effective length of database: 8,173,057
Effective search space: 6146138864
Effective search space used: 6146138864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)