BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0152800 Os03g0152800|AK066205
         (859 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0152800  Protein kinase-like domain containing protein      1670   0.0  

>Os03g0152800 Protein kinase-like domain containing protein
          Length = 859

 Score = 1670 bits (4325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/859 (95%), Positives = 818/859 (95%)

Query: 1   MNFLYRTSQPVAPELPRIPEQDQQRDSLQKPVTTLEGLIADDPYHPSPEDEDTDNGDVDI 60
           MNFLYRTSQPVAPELPRIPEQDQQRDSLQKPVTTLEGLIADDPYHPSPEDEDTDNGDVDI
Sbjct: 1   MNFLYRTSQPVAPELPRIPEQDQQRDSLQKPVTTLEGLIADDPYHPSPEDEDTDNGDVDI 60

Query: 61  GGDSADADSKNSVPTGKHTDVLDDEGWITIPNKELPDNWNDLSDMLQLQPLDRPFLFPGE 120
           GGDSADADSKNSVPTGKHTDVLDDEGWITIPNKELPDNWNDLSDMLQLQPLDRPFLFPGE
Sbjct: 61  GGDSADADSKNSVPTGKHTDVLDDEGWITIPNKELPDNWNDLSDMLQLQPLDRPFLFPGE 120

Query: 121 QVHILACMSASKQETQVISPFRIAAVMSKNGNSLQYSTNKSSHATENGDSNVKNGENGSQ 180
           QVHILACMSASKQETQVISPFRIAAVMSKNGNSLQYSTNKSSHATENGDSNVKNGENGSQ
Sbjct: 121 QVHILACMSASKQETQVISPFRIAAVMSKNGNSLQYSTNKSSHATENGDSNVKNGENGSQ 180

Query: 181 VVEDDMQSVELNSEMSPMTQDDMQNVELDNEMSPSKQDDMQNVELNNEISPSKQDILETE 240
           VVEDDMQSVELNSEMSPMTQDDMQNVELDNEMSPSKQDDMQNVELNNEISPSKQDILETE
Sbjct: 181 VVEDDMQSVELNSEMSPMTQDDMQNVELDNEMSPSKQDDMQNVELNNEISPSKQDILETE 240

Query: 241 SLLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQSYSDNQENNK 300
           SLLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQSYSDNQENNK
Sbjct: 241 SLLRLEDHKQQIESMLQRFKMSNFFVRIAESDEPLWSNKKLAVSKVPKEQSYSDNQENNK 300

Query: 301 GSRSNAYNTISDKGVFDGSTSGGIARGTARCYALQNGDIXXXXXXXXXXNKMEAPVLEVL 360
           GSRSNAYNTISDKGVFDGSTSGGIARGTARCYALQNGDI          NKMEAPVLEVL
Sbjct: 301 GSRSNAYNTISDKGVFDGSTSGGIARGTARCYALQNGDIVVVLQVNVGVNKMEAPVLEVL 360

Query: 361 QFEKSSSSNYITKNLVNGLSSGDEDPCQELLSWXXXXXXXXXXXXXXXXXXXXSASHKQS 420
           QFEKSSSSNYITKNLVNGLSSGDEDPCQELLSW                    SASHKQS
Sbjct: 361 QFEKSSSSNYITKNLVNGLSSGDEDPCQELLSWLLPLDRTLPPRSLSPPTLNPSASHKQS 420

Query: 421 YSASGSQIFSLSHFRSYSMPSASSTQPPNIRPPPISESQEFVPEKPAKTPDIINDGQLSF 480
           YSASGSQIFSLSHFRSYSMPSASSTQPPNIRPPPISESQEFVPEKPAKTPDIINDGQLSF
Sbjct: 421 YSASGSQIFSLSHFRSYSMPSASSTQPPNIRPPPISESQEFVPEKPAKTPDIINDGQLSF 480

Query: 481 RGVPLEPERYSVRCGLEGVYLPGKRWRRKVEIIQPIEVHSFAAKCTSENLLCVLIKNISP 540
           RGVPLEPERYSVRCGLEGVYLPGKRWRRKVEIIQPIEVHSFAAKCTSENLLCVLIKNISP
Sbjct: 481 RGVPLEPERYSVRCGLEGVYLPGKRWRRKVEIIQPIEVHSFAAKCTSENLLCVLIKNISP 540

Query: 541 QHVKDIVVLVDAITIVFEEASKGGAPLSLPIASIEVGHGHSLPNLALRRGEEHSFILKPA 600
           QHVKDIVVLVDAITIVFEEASKGGAPLSLPIASIEVGHGHSLPNLALRRGEEHSFILKPA
Sbjct: 541 QHVKDIVVLVDAITIVFEEASKGGAPLSLPIASIEVGHGHSLPNLALRRGEEHSFILKPA 600

Query: 601 TMSFRDRRTNNDAPLTLSLPKMNGTATNVSLAKVGETIGSLMDQYAVLVSYRCNYTESKL 660
           TMSFRDRRTNNDAPLTLSLPKMNGTATNVSLAKVGETIGSLMDQYAVLVSYRCNYTESKL
Sbjct: 601 TMSFRDRRTNNDAPLTLSLPKMNGTATNVSLAKVGETIGSLMDQYAVLVSYRCNYTESKL 660

Query: 661 FFKQATSWRPCVASDLMISVSSELSLRNPISSARVPQLPVQVLTLEATNMTSENLTVTVL 720
           FFKQATSWRPCVASDLMISVSSELSLRNPISSARVPQLPVQVLTLEATNMTSENLTVTVL
Sbjct: 661 FFKQATSWRPCVASDLMISVSSELSLRNPISSARVPQLPVQVLTLEATNMTSENLTVTVL 720

Query: 721 APEAXXXXXXXXXXXAPTTPNSSYDNLNESVRRSGLGKHRAGFRRMNSVLAGSPKESDNG 780
           APEA           APTTPNSSYDNLNESVRRSGLGKHRAGFRRMNSVLAGSPKESDNG
Sbjct: 721 APEASGSSSVVSLNSAPTTPNSSYDNLNESVRRSGLGKHRAGFRRMNSVLAGSPKESDNG 780

Query: 781 GNRISTSGGCTHLWLQSAVPLGCIPARSSTTVKLELLPLTDGIITLDTLQITIREKGLTY 840
           GNRISTSGGCTHLWLQSAVPLGCIPARSSTTVKLELLPLTDGIITLDTLQITIREKGLTY
Sbjct: 781 GNRISTSGGCTHLWLQSAVPLGCIPARSSTTVKLELLPLTDGIITLDTLQITIREKGLTY 840

Query: 841 IPEHSLEIYASAANSTGSS 859
           IPEHSLEIYASAANSTGSS
Sbjct: 841 IPEHSLEIYASAANSTGSS 859



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.128    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,921,296
Number of extensions: 1290230
Number of successful extensions: 4032
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4027
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 750
Effective length of database: 11,344,475
Effective search space: 8508356250
Effective search space used: 8508356250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)