Os03g0126000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphorybosyl anthranilate transferase 1.
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Os03g0126000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphorybosyl anthranilate transferase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.49 | 0.34 | 10.9 | -0.175 | 0.191 | 0.709 | 0.876 | -0.0488 | -0.141 | 10.7 | 19.58 | 4172 | -- | -- |
| 51.62 | 0.335 | 10.9 | -0.165 | 0.206 | 0.805 | 0.908 | -- | -0.165 | 10.5 | 18.4 | 4210 | -- | -- |
| 54.32 | 0.343 | 10.9 | -0.161 | 0.192 | 0.977 | -- | 0.581 | -0.158 | 11.5 | 18.12 | 4267 | -- | -- |
| 54.72 | 0.345 | 10.9 | -0.12 | 0.192 | 0.806 | -- | -- | -0.139 | 11.6 | 18.3 | 4253 | -- | -- |
| 56.76 | 0.351 | 10.9 | -0.171 | -- | 1 | -- | 0.649 | -0.161 | -- | 18.27 | 4221 | -- | -- |
| 60.96 | 0.366 | 10.9 | -0.613 | 0.202 | -- | 0.886 | -- | -0.322 | 10.8 | -- | -- | -- | -- |
| 64.01 | 0.375 | 10.9 | -0.575 | 0.206 | -- | -- | -- | -0.318 | 12.1 | -- | -- | -- | -- |
| 57.14 | 0.352 | 10.9 | -0.121 | -- | 0.82 | -- | -- | -0.149 | -- | 18.36 | 4210 | -- | -- |
| 54.95 | 0.345 | 10.9 | -- | 0.203 | 0.871 | -- | -- | -0.123 | 11.5 | 18.4 | 4355 | -- | -- |
| 66.68 | 0.382 | 10.9 | -0.581 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 72.71 | 0.399 | 10.9 | -- | 0.214 | -- | -- | -- | -0.254 | 12.3 | -- | -- | -- | -- |
| 57.4 | 0.353 | 10.9 | -- | -- | 0.876 | -- | -- | -0.134 | -- | 18.4 | 4220 | -- | -- |
| 75.59 | 0.406 | 10.9 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 2 | 51.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 51.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 8 | 51.43 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 35 | 51.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 70 | 51.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 84 | 51.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 104 | 52.01 | temperature | 20 | 4320 | < th | dose dependent | sin | 13 | NA |
| 107 | 52.02 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 140 | 52.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 158 | 52.14 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 180 | 52.19 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 182 | 52.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 281 | 52.36 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 350 | 52.46 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 373 | 52.49 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 439 | 52.57 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 505 | 52.65 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 654 | 52.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 743 | 52.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 772 | 53.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 776 | 53.01 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 778 | 53.01 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 828 | 53.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 839 | 53.06 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 849 | 53.08 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 861 | 53.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 902 | 53.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 918 | 53.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 931 | 53.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 933 | 53.18 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 940 | 53.18 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 10 |
| 975 | 53.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |