BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0126000 Os03g0126000|AK121680
         (395 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17990.1  | chr5:5957330-5959681 FORWARD LENGTH=445            397   e-111

>AT5G17990.1 | chr5:5957330-5959681 FORWARD LENGTH=445
          Length = 444

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/341 (59%), Positives = 241/341 (70%), Gaps = 1/341 (0%)

Query: 54  SDASPRT-ASFDKVLETLIGGDHFSXXXXXXXXXXXXXXXXXXXXXXFLVLLRAKGETYE 112
           ++ASP +  SF++++ETLI     S                      FLVLLRAKGETYE
Sbjct: 98  ANASPSSIKSFNQLIETLIDRVDLSETEAESSLEFLLNEANEALISAFLVLLRAKGETYE 157

Query: 113 EIVGLAKAMIGCCVRVDGLDDAVDIVGTGGDGADTVNISTGSTILXXXXXXXXXXQXXXX 172
           EIVGLA+AM+    +V+GL DAVDIVGTGGDGA+TVNISTGS+IL          Q    
Sbjct: 158 EIVGLARAMMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRS 217

Query: 173 XXXXXXXXDVLEAFGVNIELGPEGIKRCVNEVGVGFMMSANYHPAMKIVKPVRKKLKIKT 232
                   DVLEA GV ++LGPEGIKRCV E G+GFMMS  YHPAMKIV PVRKKLKIKT
Sbjct: 218 SSSACGSADVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPVRKKLKIKT 277

Query: 233 VFNILGPLLNPARVPYAVIGVYHENIVTKMAKAAQKFGMKRALVVHSKGLDEISPLGPGY 292
           VFNILGP+LNPARV YAV+GVYH+++V KMAKA Q+FGMKRALVVHS GLDE+SPLG G 
Sbjct: 278 VFNILGPMLNPARVSYAVVGVYHKDLVVKMAKALQRFGMKRALVVHSCGLDEMSPLGGGL 337

Query: 293 ILDVTPRKIEKMLFDPLDFGIPRCTLEDLKGGDPAFNAKVLQDVLAGQRGSIADXXXXXX 352
           + DVTP KIE+  FDPLDFGIPRCTLEDL+GG P +NA VL+ VL+G+ G+IAD      
Sbjct: 338 VYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDYNADVLRRVLSGESGAIADSLILNA 397

Query: 353 XXXXXXXGKVNTLHDGVALAQETQRSGEAINTLESWIKISN 393
                   +V TL +GV +A+E Q SG+AI TL+SWI ISN
Sbjct: 398 AAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINISN 438



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,215,788
Number of extensions: 214269
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)