BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0126000 Os03g0126000|AK121680
         (395 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0126000  Similar to Phosphorybosyl anthranilate transfe...   589   e-168

>Os03g0126000 Similar to Phosphorybosyl anthranilate transferase 1
          Length = 395

 Score =  589 bits (1518), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/379 (79%), Positives = 300/379 (79%)

Query: 17  PAPVSXXXXXXXXXXXXXXXXXXXXXXVAVQHTAARASDASPRTASFDKVLETLIGGDHF 76
           PAPVS                      VAVQHTAARASDASPRTASFDKVLETLIGGDHF
Sbjct: 17  PAPVSHLLPLRAHHARPLPARLPPPPRVAVQHTAARASDASPRTASFDKVLETLIGGDHF 76

Query: 77  SXXXXXXXXXXXXXXXXXXXXXXFLVLLRAKGETYEEIVGLAKAMIGCCVRVDGLDDAVD 136
           S                      FLVLLRAKGETYEEIVGLAKAMIGCCVRVDGLDDAVD
Sbjct: 77  SEEEAEATLRLLLEEENEARIAAFLVLLRAKGETYEEIVGLAKAMIGCCVRVDGLDDAVD 136

Query: 137 IVGTGGDGADTVNISTGSTILXXXXXXXXXXQXXXXXXXXXXXXDVLEAFGVNIELGPEG 196
           IVGTGGDGADTVNISTGSTIL          Q            DVLEAFGVNIELGPEG
Sbjct: 137 IVGTGGDGADTVNISTGSTILAAAAGAKVAKQGSRASSSACGSADVLEAFGVNIELGPEG 196

Query: 197 IKRCVNEVGVGFMMSANYHPAMKIVKPVRKKLKIKTVFNILGPLLNPARVPYAVIGVYHE 256
           IKRCVNEVGVGFMMSANYHPAMKIVKPVRKKLKIKTVFNILGPLLNPARVPYAVIGVYHE
Sbjct: 197 IKRCVNEVGVGFMMSANYHPAMKIVKPVRKKLKIKTVFNILGPLLNPARVPYAVIGVYHE 256

Query: 257 NIVTKMAKAAQKFGMKRALVVHSKGLDEISPLGPGYILDVTPRKIEKMLFDPLDFGIPRC 316
           NIVTKMAKAAQKFGMKRALVVHSKGLDEISPLGPGYILDVTPRKIEKMLFDPLDFGIPRC
Sbjct: 257 NIVTKMAKAAQKFGMKRALVVHSKGLDEISPLGPGYILDVTPRKIEKMLFDPLDFGIPRC 316

Query: 317 TLEDLKGGDPAFNAKVLQDVLAGQRGSIADXXXXXXXXXXXXXGKVNTLHDGVALAQETQ 376
           TLEDLKGGDPAFNAKVLQDVLAGQRGSIAD             GKVNTLHDGVALAQETQ
Sbjct: 317 TLEDLKGGDPAFNAKVLQDVLAGQRGSIADALVLNAAASLLVSGKVNTLHDGVALAQETQ 376

Query: 377 RSGEAINTLESWIKISNSC 395
           RSGEAINTLESWIKISNSC
Sbjct: 377 RSGEAINTLESWIKISNSC 395



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,078,765
Number of extensions: 347010
Number of successful extensions: 787
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)