Os03g0117200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Riboflavin biosynthesis protein RibD.
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Os03g0117200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Riboflavin biosynthesis protein RibD.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.84 | 0.22 | 11.4 | -1.47 | 0.431 | 0.658 | 0.49 | -0.734 | -0.555 | 8.03 | 9.86 | 725 | -- | -- |
| 22.2 | 0.219 | 11.4 | -1.34 | 0.426 | 0.649 | 0.65 | -- | -0.521 | 8.17 | 11.8 | 753 | -- | -- |
| 22.41 | 0.221 | 11.4 | -1.51 | 0.43 | 0.65 | -- | -1.09 | -0.57 | 7.83 | 12.85 | 713 | -- | -- |
| 22.86 | 0.224 | 11.4 | -1.3 | 0.395 | 0.758 | -- | -- | -0.528 | 5.31 | 11.43 | 713 | -- | -- |
| 27.87 | 0.246 | 11.4 | -1.46 | -- | 0.524 | -- | -0.637 | -0.548 | -- | 11.62 | 1358 | -- | -- |
| 27.57 | 0.246 | 11.4 | -1.17 | 0.282 | -- | 0.563 | -- | -0.419 | 7.99 | -- | -- | -- | -- |
| 28.42 | 0.25 | 11.4 | -1.16 | 0.287 | -- | -- | -- | -0.421 | 7.47 | -- | -- | -- | -- |
| 28.2 | 0.247 | 11.4 | -1.32 | -- | 0.519 | -- | -- | -0.512 | -- | 13.21 | 1395 | -- | -- |
| 63.47 | 0.373 | 11.3 | -- | 0.285 | 0.133 | -- | -- | -0.308 | 7.25 | 11.43 | 713 | -- | -- |
| 32.83 | 0.268 | 11.4 | -1.15 | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
| 63.66 | 0.373 | 11.3 | -- | 0.278 | -- | -- | -- | -0.292 | 7.75 | -- | -- | -- | -- |
| 47.78 | 0.322 | 11.3 | -- | -- | -0.72 | -- | -- | -0.0722 | -- | 9.543 | 47520 | -- | -- |
| 67.83 | 0.384 | 11.3 | -- | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 2 | 21.31 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 3 | 21.34 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 11 | 21.47 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 22 | NA |
| 15 | 21.49 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 19 | NA |
| 45 | 21.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 47 | 21.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 53 | 21.77 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 55 | 21.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 57 | 21.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 58 | 21.78 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 77 | 21.82 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 87 | 21.85 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 88 | 21.85 | atmosphere | 995 | 270 | > th | dose dependent | sin | 18 | NA |
| 96 | 21.86 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 20 | NA |
| 108 | 21.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 121 | 21.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 122 | 21.92 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 143 | 21.94 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 157 | 21.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 168 | 21.97 | atmosphere | 995 | 720 | > th | dose dependent | sin | 22 | NA |
| 174 | 21.98 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 212 | 22.03 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 237 | 22.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 282 | 22.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 294 | 22.13 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 314 | 22.15 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 327 | 22.16 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 17 | NA |
| 333 | 22.16 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 341 | 22.17 | atmosphere | 995 | 10 | > th | dose dependent | sin | 16 | NA |
| 348 | 22.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 349 | 22.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 350 | 22.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 351 | 22.18 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 355 | 22.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 364 | 22.19 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 365 | 22.19 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 384 | 22.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 414 | 22.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 415 | 22.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 427 | 22.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 429 | 22.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 432 | 22.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 445 | 22.25 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 447 | 22.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 472 | 22.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 473 | 22.27 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 502 | 22.28 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 531 | 22.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 549 | 22.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 606 | 22.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 745 | 22.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 748 | 22.44 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 750 | 22.44 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 754 | 22.44 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 790 | 22.45 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 809 | 22.45 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 829 | 22.46 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 835 | 22.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 852 | 22.48 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 864 | 22.48 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 870 | 22.49 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 884 | 22.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 910 | 22.51 | atmosphere | 995 | 720 | > th | dose dependent | no | NA | NA |
| 944 | 22.53 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 949 | 22.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 955 | 22.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 962 | 22.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 967 | 22.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 994 | 22.55 | atmosphere | 1015 | 720 | < th | dose dependent | no | NA | NA |