BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0117200 Os03g0117200|AK070281
         (423 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0117200  Similar to Riboflavin biosynthesis protein RibD     767   0.0  

>Os03g0117200 Similar to Riboflavin biosynthesis protein RibD
          Length = 423

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/423 (89%), Positives = 379/423 (89%)

Query: 1   MRPYRNHLAFYHTNGSLDWGSLLCATDMASSLVSRTHLXXXXXXXXXXXXXXXXXFAXXX 60
           MRPYRNHLAFYHTNGSLDWGSLLCATDMASSLVSRTHL                 FA   
Sbjct: 1   MRPYRNHLAFYHTNGSLDWGSLLCATDMASSLVSRTHLTPRPAAAASTASPCSARFAVRR 60

Query: 61  XXXXXXXXXCQAQASDMDGHYMRRCVELARKAAGHTSPNPMXXXXXXXXXXXXXXXFHPK 120
                    CQAQASDMDGHYMRRCVELARKAAGHTSPNPM               FHPK
Sbjct: 61  RRGLVGGVRCQAQASDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPK 120

Query: 121 AGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNP 180
           AGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNP
Sbjct: 121 AGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNP 180

Query: 181 IVASKGIERLRSAGIDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQ 240
           IVASKGIERLRSAGIDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQ
Sbjct: 181 IVASKGIERLRSAGIDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQ 240

Query: 241 IGSGADQPEGYYSQLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQCENSQLNI 300
           IGSGADQPEGYYSQLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQCENSQLNI
Sbjct: 241 IGSGADQPEGYYSQLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQCENSQLNI 300

Query: 301 PFLKEERAAEAVVLSDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGG 360
           PFLKEERAAEAVVLSDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGG
Sbjct: 301 PFLKEERAAEAVVLSDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGG 360

Query: 361 GIASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 420
           GIASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ
Sbjct: 361 GIASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 420

Query: 421 GYV 423
           GYV
Sbjct: 421 GYV 423



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,715,336
Number of extensions: 473826
Number of successful extensions: 966
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 319
Effective length of database: 11,605,545
Effective search space: 3702168855
Effective search space used: 3702168855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)