BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0117200 Os03g0117200|AK070281
         (423 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20960.1  | chr4:11212077-11213530 FORWARD LENGTH=427          330   1e-90
AT3G47390.1  | chr3:17462094-17464655 FORWARD LENGTH=600           89   5e-18

>AT4G20960.1 | chr4:11212077-11213530 FORWARD LENGTH=427
          Length = 426

 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/355 (50%), Positives = 236/355 (66%), Gaps = 13/355 (3%)

Query: 78  DGHYMRRCVELARKAAGHTSPNPMXXXXXXXXXXXXXXXFHPKAGQPHAEVFALRDAGDL 137
           D  YMR+CVELA++A G TSPNPM               FHPKAGQPHAEVFALRDAG+L
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133

Query: 138 AENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAGIDV 197
           AENATAYVSLEPCNHYGRTPPCTEALI AKV+ VV+GM DPNPIV S GI RL+ AGIDV
Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 193

Query: 198 RLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQLLK 257
            + V+EE  C+K+NE +IHRMLTGK F  LR ++S+NG ++++IG GA    GYYS+LL+
Sbjct: 194 TVSVEEEL-CKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSKLLQ 252

Query: 258 EYDGVIISSNFAKTNTLPVSREA--GAKQPLYIIIAQCENSQ----LNIPFLKEERAAEA 311
           EYD +I+SS+ +   +   S+EA   + QP+ II+A   N+Q    L      EE   + 
Sbjct: 253 EYDAIILSSSLSDELSSISSQEAINVSIQPIQIIVAS--NAQQSHILASSHTVEESGPKV 310

Query: 312 VVLSDSPITVE----PAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGGIASLLN 367
           VV +      E     +GV+ +VL+++NLD+IL     RGLCSVL+D R     +  LL 
Sbjct: 311 VVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVLLR 370

Query: 368 NFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQGY 422
           +  + KL+QKV++E+LP W+        +    +S  +KD++  ++ GSVLL+GY
Sbjct: 371 DGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 425



>AT3G47390.1 | chr3:17462094-17464655 FORWARD LENGTH=600
          Length = 599

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 163/379 (43%), Gaps = 48/379 (12%)

Query: 78  DGHYMRRCVELARKAAGHTSPNP-MXXXXXXXXXXXXXXXFHPKAGQPHAEVFALRDAGD 136
           D  ++RR  +L+  +AG TSP+P                 +    G   AE  A+  AG+
Sbjct: 32  DAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGE 91

Query: 137 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAGID 196
            +  ATAY+++EP + +G     + AL+ A ++ VVVG+  P   +    I  LRS GI+
Sbjct: 92  FSRGATAYLNMEPGDCHGDHTAVS-ALVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIE 150

Query: 197 V---------RLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGA-- 245
           V         ++  D   SC  +N   IHR  +   F+ L+  ++++G +    G  A  
Sbjct: 151 VNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWI 210

Query: 246 --DQPEGYYSQLLKEYDGVIISSNFAKTNTLPVS-REAGAKQPLYIIIAQCENSQLNIPF 302
                     +L    D VI+  N  + +   ++ R      P  I++ Q     L++P 
Sbjct: 211 SSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQGHTPTRIVMTQ----SLDLP- 265

Query: 303 LKEERAAEAVVLSDSPITVE-------------PAGVDVLVLDQMNLDAILQLLAQRGLC 349
              E+A    V   S I V                GV+V+  D +N   +++    RG  
Sbjct: 266 ---EKANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYL 322

Query: 350 SVLVDFREAGGGIASLLNNFQDDKLVQKVVVELLP-VWAVSKGPSDLAFGG----SQSFP 404
           S+L    E GG +A+   +     ++ KVV  + P +   SK PS +   G    +Q+  
Sbjct: 323 SIL---WECGGTLAA---SAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALN 376

Query: 405 LKDVEHSEVNGSVLLQGYV 423
           L DV + +V   +L+ G++
Sbjct: 377 LIDVCYEQVGPDMLVSGFL 395



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,962,700
Number of extensions: 293757
Number of successful extensions: 632
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 322
Effective length of database: 8,337,553
Effective search space: 2684692066
Effective search space used: 2684692066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)