Os03g0113800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0113800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.44 | 0.246 | 10.4 | -0.34 | 0.512 | 0.555 | -0.266 | -1.1 | -0.132 | 6.19 | 14.2 | 434 | -- | -- |
| 28.11 | 0.247 | 10.4 | -0.167 | 0.515 | 0.537 | -0.0178 | -- | -0.0847 | 6.27 | 13.28 | 468 | -- | -- |
| 27.58 | 0.245 | 10.4 | -0.31 | 0.514 | 0.559 | -- | -0.87 | -0.123 | 6.24 | 13.32 | 451 | -- | -- |
| 28.11 | 0.247 | 10.4 | -0.167 | 0.515 | 0.538 | -- | -- | -0.0848 | 6.27 | 13.22 | 468 | -- | -- |
| 34.24 | 0.273 | 10.4 | -0.327 | -- | 0.436 | -- | -0.451 | -0.118 | -- | -30.23 | 2729 | -- | -- |
| 31.35 | 0.262 | 10.4 | -0.045 | 0.368 | -- | -0.124 | -- | -0.00535 | 6.22 | -- | -- | -- | -- |
| 31.39 | 0.262 | 10.4 | -0.0464 | 0.368 | -- | -- | -- | -0.00491 | 6.22 | -- | -- | -- | -- |
| 34.44 | 0.273 | 10.4 | -0.214 | -- | 0.437 | -- | -- | -0.0875 | -- | 10.92 | 2745 | -- | -- |
| 28.77 | 0.25 | 10.4 | -- | 0.491 | 0.459 | -- | -- | -0.056 | 6.27 | 13.05 | 463 | -- | -- |
| 38.4 | 0.29 | 10.4 | -0.0363 | -- | -- | -- | -- | 0.00315 | -- | -- | -- | -- | -- |
| 31.45 | 0.262 | 10.4 | -- | 0.367 | -- | -- | -- | 0.00026 | 6.23 | -- | -- | -- | -- |
| 35.44 | 0.277 | 10.4 | -- | -- | 0.346 | -- | -- | -0.0489 | -- | 5.845 | 2720 | -- | -- |
| 38.43 | 0.289 | 10.4 | -- | -- | -- | -- | -- | 0.00718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.35 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 2 | 23.39 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 5 | 23.65 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 10 | 23.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 28 | 24.16 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 48 | 24.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 53 | 24.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 66 | 24.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 78 | 24.66 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 81 | 24.68 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 185 | 25.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 190 | 25.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 204 | 25.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 206 | 25.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 207 | 25.28 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 227 | 25.35 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 246 | 25.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 248 | 25.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 250 | 25.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 263 | 25.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 264 | 25.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 266 | 25.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 267 | 25.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 269 | 25.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 270 | 25.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 271 | 25.45 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 274 | 25.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 280 | 25.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 281 | 25.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 291 | 25.49 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 294 | 25.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 9 |
| 302 | 25.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 303 | 25.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 304 | 25.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 308 | 25.52 | radiation | 1.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 309 | 25.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 314 | 25.52 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 320 | 25.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 5 |
| 321 | 25.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 324 | 25.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 335 | 25.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 336 | 25.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 339 | 25.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 341 | 25.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 351 | 25.62 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 356 | 25.63 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 371 | 25.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 372 | 25.65 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 375 | 25.66 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 9 |
| 384 | 25.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 392 | 25.70 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 447 | 25.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 451 | 25.77 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 463 | 25.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 19 |
| 470 | 25.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 471 | 25.80 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 481 | 25.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 487 | 25.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 491 | 25.82 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 515 | 25.85 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 516 | 25.85 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 518 | 25.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 521 | 25.85 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 530 | 25.86 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 532 | 25.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 535 | 25.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 542 | 25.87 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 560 | 25.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 602 | 25.93 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 614 | 25.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 615 | 25.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 617 | 25.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 618 | 25.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 621 | 25.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 622 | 25.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 629 | 25.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 630 | 25.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 637 | 25.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 643 | 25.95 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 644 | 25.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 658 | 25.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 663 | 25.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 674 | 25.97 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 675 | 25.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 684 | 25.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 688 | 25.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 709 | 25.99 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 717 | 26.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 728 | 26.01 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 756 | 26.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 762 | 26.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 763 | 26.04 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 766 | 26.04 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 797 | 26.06 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 809 | 26.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 853 | 26.11 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 924 | 26.15 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 942 | 26.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 950 | 26.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 960 | 26.17 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 963 | 26.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 971 | 26.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 975 | 26.17 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 988 | 26.18 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 19 |