BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0113800 Os03g0113800|AK065925
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0113800  Protein prenyltransferase domain containing pr...   921   0.0  
Os10g0518300  Protein prenyltransferase domain containing pr...   695   0.0  

>Os03g0113800 Protein prenyltransferase domain containing protein
          Length = 482

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/482 (93%), Positives = 453/482 (93%)

Query: 1   MEDSARPTPADSGELPNGAGMXXXXXXXXXXXXXXXXXXXSGIANDSETNAALGAEGEPS 60
           MEDSARPTPADSGELPNGAGM                   SGIANDSETNAALGAEGEPS
Sbjct: 1   MEDSARPTPADSGELPNGAGMAEDAVVAPDAGEAPEEGEESGIANDSETNAALGAEGEPS 60

Query: 61  RALTMRELLGELKDSGEPSSGRSTLSEGNGIGSAGAERASQDSLQFSSHHDVAMDLINSV 120
           RALTMRELLGELKDSGEPSSGRSTLSEGNGIGSAGAERASQDSLQFSSHHDVAMDLINSV
Sbjct: 61  RALTMRELLGELKDSGEPSSGRSTLSEGNGIGSAGAERASQDSLQFSSHHDVAMDLINSV 120

Query: 121 TGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDAYYNWALVLQESADNVXXXXXXXXXXL 180
           TGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDAYYNWALVLQESADNV          L
Sbjct: 121 TGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDAYYNWALVLQESADNVDPDSSSSKDSL 180

Query: 181 LEEACKKYAEATRLCPTLYDAYYNWAIAIADRAKMRGRTKEAEELWKQAIMNYDKAVQLN 240
           LEEACKKYAEATRLCPTLYDAYYNWAIAIADRAKMRGRTKEAEELWKQAIMNYDKAVQLN
Sbjct: 181 LEEACKKYAEATRLCPTLYDAYYNWAIAIADRAKMRGRTKEAEELWKQAIMNYDKAVQLN 240

Query: 241 WNSPQALNNWGLGLQELSAIVPARDKQTIIKTAISKFRSAIQLQFDFHRAIYNLGTVLYG 300
           WNSPQALNNWGLGLQELSAIVPARDKQTIIKTAISKFRSAIQLQFDFHRAIYNLGTVLYG
Sbjct: 241 WNSPQALNNWGLGLQELSAIVPARDKQTIIKTAISKFRSAIQLQFDFHRAIYNLGTVLYG 300

Query: 301 LAEDTMRSAGPDVSPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKAGYL 360
           LAEDTMRSAGPDVSPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKAGYL
Sbjct: 301 LAEDTMRSAGPDVSPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKAGYL 360

Query: 361 TAPPADNTIAPHKHWERSEFVLNHEGLQQVDASESPSSKPLGHMGRSKKYIKVAVEDIVS 420
           TAPPADNTIAPHKHWERSEFVLNHEGLQQVDASESPSSKPLGHMGRSKKYIKVAVEDIVS
Sbjct: 361 TAPPADNTIAPHKHWERSEFVLNHEGLQQVDASESPSSKPLGHMGRSKKYIKVAVEDIVS 420

Query: 421 VSACSDLTLPPGAGLCIETIHGPLFLVADTWESLDGWLDAIRLVYTIFARGKSDVLAGII 480
           VSACSDLTLPPGAGLCIETIHGPLFLVADTWESLDGWLDAIRLVYTIFARGKSDVLAGII
Sbjct: 421 VSACSDLTLPPGAGLCIETIHGPLFLVADTWESLDGWLDAIRLVYTIFARGKSDVLAGII 480

Query: 481 TG 482
           TG
Sbjct: 481 TG 482



>Os10g0518300 Protein prenyltransferase domain containing protein
          Length = 472

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/448 (77%), Positives = 379/448 (84%), Gaps = 12/448 (2%)

Query: 41  SGIANDSETNAALGAEGEPSRALTMRELLGELKDSGEPSSG---RSTLSEGNGIGSAGAE 97
           S      E NA LGAEG  SR   MREL    K+  E ++G   ++   E NGIGSA A+
Sbjct: 31  SATVKQEEANAVLGAEG--SRPFAMREL----KEDHEVAAGSGVKAASGERNGIGSADAQ 84

Query: 98  RAS--QDSLQ-FSSHHDVAMDLINSVTGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDA 154
            +S  Q+S+Q FSSHHDVAMDLINSVTGVDEEGRSRQRILSFAAKRY+SAIERN +DPDA
Sbjct: 85  GSSYSQESMQQFSSHHDVAMDLINSVTGVDEEGRSRQRILSFAAKRYISAIERNHDDPDA 144

Query: 155 YYNWALVLQESADNVXXXXXXXXXXLLEEACKKYAEATRLCPTLYDAYYNWAIAIADRAK 214
           YYNWALVLQESADNV          LLEEACKKYAEATRLCPTLYDAYYNWAIAIADRAK
Sbjct: 145 YYNWALVLQESADNVDPNSSSSKDALLEEACKKYAEATRLCPTLYDAYYNWAIAIADRAK 204

Query: 215 MRGRTKEAEELWKQAIMNYDKAVQLNWNSPQALNNWGLGLQELSAIVPARDKQTIIKTAI 274
           MRGRTKEAEELWKQAI+NY+KAVQLNWNSPQALNNWGLGLQELSAIVPAR+KQTIIKTAI
Sbjct: 205 MRGRTKEAEELWKQAILNYEKAVQLNWNSPQALNNWGLGLQELSAIVPAREKQTIIKTAI 264

Query: 275 SKFRSAIQLQFDFHRAIYNLGTVLYGLAEDTMRSAGPDVSPNDLYSQSAIYVAAAHALKP 334
           SKFR+AIQLQFDFHRAIYNLGTVLYGLAEDTMRS  P VS ++ YSQSAIYVAAAHALKP
Sbjct: 265 SKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTMRSGKPGVSASEFYSQSAIYVAAAHALKP 324

Query: 335 NYSVYRSALRLVRSMLPLPYLKAGYLTAPPADNTIAPHKHWERSEFVLNHEGLQQVDASE 394
           NYSVYRSALRLVRSMLPLPYLK GYL APP ++ IAPHK WERS+FVLNHE LQQV+AS+
Sbjct: 325 NYSVYRSALRLVRSMLPLPYLKVGYLIAPPENSAIAPHKEWERSQFVLNHEELQQVNASD 384

Query: 395 SPSSKPLGHMGRSKKYIKVAVEDIVSVSACSDLTLPPGAGLCIETIHGPLFLVADTWESL 454
            P S+  GH+   +K  ++ V DIVSVSAC+DLTLPPGAGL I+TIHGP FLVAD WE++
Sbjct: 385 QPPSQSPGHVDSGRKLFRIVVADIVSVSACADLTLPPGAGLRIDTIHGPRFLVADNWETI 444

Query: 455 DGWLDAIRLVYTIFARGKSDVLAGIITG 482
           D WLDAIRLVYTIFARG+SDVLAGIITG
Sbjct: 445 DSWLDAIRLVYTIFARGRSDVLAGIITG 472



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,981,069
Number of extensions: 639953
Number of successful extensions: 1314
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1300
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)