BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0113800 Os03g0113800|AK065925
         (482 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41950.1  | chr5:16785825-16789360 FORWARD LENGTH=566          587   e-168

>AT5G41950.1 | chr5:16785825-16789360 FORWARD LENGTH=566
          Length = 565

 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/452 (64%), Positives = 346/452 (76%), Gaps = 35/452 (7%)

Query: 49  TNAALGAEGEPSRALTMRELLGELKDSGEPSSGRSTLSEGNGIGSAGAERASQDSLQFSS 108
           T + L  + + ++  TMRELL ELK             EG+G   + A   S++S    +
Sbjct: 131 TTSVLKKDDDGNKTFTMRELLSELKSE-----------EGDGTPHSSASPFSRESASQPA 179

Query: 109 HHDVAMDLINSVTGVDEEGRSRQRILSFAAKRYVSAIERNPEDPDAYYNWALVLQESADN 168
            ++ AMDLIN +   DEEGRSRQR+L+FAA++Y SAIERNP+D DA YNWAL+LQESADN
Sbjct: 180 ENNPAMDLINRIQVNDEEGRSRQRVLAFAARKYASAIERNPDDHDALYNWALILQESADN 239

Query: 169 VXXXXXX-XXXXLLEEACKKYAEATRLCPTLYDAYYNWAIAIADRAKMRGRTKEAEELWK 227
           V           LLEEACKKY EATRLCPTLYDAYYNWAIAI+DRAK+RGRTKEAEELW+
Sbjct: 240 VSPDSVSPSKDDLLEEACKKYDEATRLCPTLYDAYYNWAIAISDRAKIRGRTKEAEELWE 299

Query: 228 QAIMNYDKAVQLNWNSPQALNNWGLGLQELSAIVPARDKQTIIKTAISKFRSAIQLQFDF 287
           QA  NY+KAVQLNWNS QALNNWGL LQELS IVPAR+K+ +++TAISKFR+AI+LQFDF
Sbjct: 300 QAADNYEKAVQLNWNSSQALNNWGLVLQELSQIVPAREKEKVVRTAISKFRAAIRLQFDF 359

Query: 288 HRAIYNLGTVLYGLAEDTMRSA----GPDVSPNDLYSQSAIYVAAAHALKPNYSVYRSAL 343
           HRAIYNLGTVLYGLAEDT+R+     G D+ P +LYSQSAIY+AAAH+LKP+YSVY SAL
Sbjct: 360 HRAIYNLGTVLYGLAEDTLRTGGSGNGKDMPPGELYSQSAIYIAAAHSLKPSYSVYSSAL 419

Query: 344 RLVRSMLPLPYLKAGYLTAPPADNTIAPHKHWERSEFVLNHEGLQQVDASESPSSKPLGH 403
           RLVRSMLPLP+LK GYLTAPP  N++APH  W+R+EF LNHE L QV   E         
Sbjct: 420 RLVRSMLPLPHLKVGYLTAPPVGNSLAPHSDWKRTEFELNHERLLQVLKPEP------RE 473

Query: 404 MGRS-------------KKYIKVAVEDIVSVSACSDLTLPPGAGLCIETIHGPLFLVADT 450
           MGR+             +K +KV + +IVSV+ C+DLTLPPGAGLCI+TIHGP+FLVAD+
Sbjct: 474 MGRNLSGKAETMSTNVERKTVKVNITEIVSVTPCADLTLPPGAGLCIDTIHGPVFLVADS 533

Query: 451 WESLDGWLDAIRLVYTIFARGKSDVLAGIITG 482
           WESLDGWLDAIRLVYTI+ARGKSDVLAGIITG
Sbjct: 534 WESLDGWLDAIRLVYTIYARGKSDVLAGIITG 565



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,782,208
Number of extensions: 381363
Number of successful extensions: 796
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)