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Os03g0109800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF827, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0347) R2 : 0.91
β1 : -1.8 (0.127) R2dD : 0.0404 R2D : 0.0213
β2 : 4.5 (0.129) R2dC : 0.498 R2C : 0.76
β3 : -1.85 (0.135) R2dE : 0.0776 R2E : 0.361
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.932 (0.0743) R2dN8 : 0.0426 R2N8 : 0.0159
σ : 0.649
deviance : 193.99
__
_____
C
peak time of C : 7.21
E
wheather : atmosphere
threshold : 996.4
memory length : 255
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.8
open length of G : 5.36

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.03 0.622 10.8 -1.86 4.48 -1.86 2.12 -0.754 -0.948 7.21 995.9 251 12.9 5.3
175.64 0.617 10.8 -1.84 4.48 -1.86 2.62 -- -0.938 7.22 996.3 254 12.8 5.33
182.68 0.63 10.8 -1.87 4.68 -1.67 -- -1.87 -0.949 7.14 995.9 244 12.9 5.43
193.99 0.649 10.8 -1.8 4.5 -1.85 -- -- -0.932 7.21 996.4 255 12.8 5.36
261.67 0.753 10.9 -1.13 -- -5.37 -- 0.213 -0.824 -- 979.6 543 10.8 6.98
244.41 0.733 10.8 -1.88 5.81 -- 2.59 -- -1.03 6.92 -- -- -- --
261.77 0.758 10.8 -1.83 5.82 -- -- -- -1.04 6.91 -- -- -- --
244.87 0.729 10.9 -1.48 -- -5.47 -- -- -0.968 -- 983.4 564 10.8 6.85
278.25 0.777 10.7 -- 4.42 -1.91 -- -- -0.746 7.24 996 249 12.9 5.35
2039.2 2.11 10.9 -1.71 -- -- -- -- -0.93 -- -- -- -- --
349.98 0.875 10.7 -- 5.8 -- -- -- -0.836 6.92 -- -- -- --
316.72 0.829 10.8 -- -- -5.33 -- -- -0.752 -- 981.1 595 10.7 6.51
2115.99 2.15 10.8 -- -- -- -- -- -0.74 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.02 atmosphere 995.0 270 > th dose dependent rect. 13 5
2 178.18 atmosphere 995.0 270 > th dose independent rect. 13 5
5 180.19 atmosphere 1000.0 10 > th dose independent rect. 14 20
6 180.35 precipitation 0.1 270 < th dose independent rect. 17 20
7 180.35 precipitation 0.1 270 < th dose dependent rect. 17 20
11 181.38 atmosphere 995.0 270 > th dose independent rect. 13 19
20 182.95 temperature 20.0 270 > th dose independent rect. 13 4
22 183.00 atmosphere 995.0 270 > th dose independent rect. 12 21
29 184.01 wind 1.0 270 > th dose independent rect. 13 4
30 184.08 temperature 10.0 270 > th dose independent rect. 13 4
32 184.08 atmosphere 1010.0 270 < th dose independent rect. 13 4
34 184.08 temperature 10.0 270 > th dose independent rect. 17 20
36 184.47 precipitation 0.1 270 < th dose independent rect. 8 14
37 184.47 precipitation 0.1 270 < th dose dependent rect. 8 14
38 184.48 wind 9.0 270 < th dose independent rect. 13 4
39 184.56 wind 9.0 270 < th dose independent rect. 17 20
50 185.39 humidity 50.0 270 > th dose independent rect. 18 19
51 185.47 precipitation 0.1 270 < th dose independent rect. 13 4
52 185.47 precipitation 0.1 270 < th dose dependent rect. 13 4
56 185.78 humidity 50.0 270 > th dose dependent rect. 22 10
59 186.03 atmosphere 995.0 270 > th dose independent rect. 18 19
61 186.38 radiation 10.0 10 > th dose independent rect. 10 6
64 186.47 radiation 1.0 270 > th dose independent rect. 8 5
78 187.24 radiation 40.0 270 < th dose independent rect. 14 3
102 188.04 radiation 20.0 10 < th dose dependent sin 23 NA
103 188.13 precipitation 0.1 270 < th dose independent rect. 8 5
104 188.13 precipitation 0.1 270 < th dose dependent rect. 8 5
105 188.16 temperature 10.0 270 > th dose independent rect. 8 5
106 188.16 atmosphere 995.0 270 > th dose independent rect. 8 5
107 188.16 atmosphere 1015.0 270 < th dose independent rect. 8 5
108 188.16 temperature 10.0 270 > th dose independent rect. 13 19
109 188.19 humidity 50.0 270 > th dose independent rect. 13 5
112 188.25 wind 1.0 270 > th dose independent rect. 8 5
114 188.28 humidity 50.0 270 > th dose independent rect. 8 5
116 188.33 radiation 40.0 10 < th dose dependent rect. 14 20
127 188.60 radiation 10.0 10 > th dose independent rect. 10 4
129 188.63 wind 1.0 270 > th dose independent rect. 17 20
134 188.85 wind 9.0 270 < th dose independent rect. 8 5
138 188.94 temperature 10.0 270 > th dose independent rect. 22 10
139 188.94 temperature 30.0 270 < th dose independent rect. 22 10
140 188.94 humidity 50.0 270 > th dose independent rect. 22 10
142 188.94 atmosphere 995.0 270 > th dose independent rect. 22 10
143 188.94 temperature 10.0 270 > th dose independent rect. 8 14
146 188.99 radiation 40.0 270 < th dose independent rect. 22 10
147 189.00 wind 1.0 270 > th dose independent rect. 9 3
152 189.06 wind 9.0 270 < th dose independent rect. 22 10
153 189.07 wind 9.0 270 < th dose independent rect. 13 19
159 189.20 radiation 1.0 270 > th dose independent rect. 9 3
171 189.46 radiation 10.0 10 > th dose independent sin 22 NA
179 189.60 precipitation 0.1 270 < th dose independent rect. 9 3
180 189.60 precipitation 0.1 270 < th dose dependent rect. 9 3
181 189.64 temperature 10.0 270 > th dose independent rect. 9 3
182 189.64 atmosphere 995.0 270 > th dose independent rect. 9 3
183 189.64 atmosphere 1015.0 270 < th dose independent rect. 9 3
184 189.64 temperature 10.0 270 > th dose independent rect. 12 21
185 189.66 radiation 20.0 10 < th dose dependent rect. 7 12
198 190.07 humidity 90.0 270 < th dose independent rect. 13 4
208 190.17 wind 9.0 270 < th dose independent rect. 9 3
209 190.20 wind 9.0 270 < th dose independent rect. 8 14
210 190.21 atmosphere 995.0 270 > th dose independent rect. 3 14
220 190.30 atmosphere 1015.0 270 < th dose independent rect. 23 9
236 190.57 radiation 10.0 10 > th dose independent rect. 8 8
237 190.60 radiation 10.0 10 > th dose independent rect. 10 21
240 190.65 wind 9.0 270 < th dose independent rect. 12 21
243 190.69 atmosphere 995.0 10 > th dose dependent rect. 14 7
285 191.21 atmosphere 1000.0 10 > th dose independent rect. 14 7
295 191.44 precipitation 0.1 270 < th dose independent rect. 22 10
297 191.44 precipitation 0.1 270 < th dose dependent rect. 22 10
307 191.70 atmosphere 1015.0 270 < th dose independent rect. 13 19
372 192.82 atmosphere 1000.0 10 > th dose independent rect. 1 9
380 192.95 radiation 10.0 10 < th dose independent rect. 7 12
395 193.12 radiation 30.0 90 < th dose independent rect. 13 6
399 193.18 precipitation 0.1 270 < th dose independent rect. 17 10
400 193.18 precipitation 0.1 270 < th dose dependent rect. 17 10
404 193.23 radiation 40.0 90 < th dose independent rect. 14 20
405 193.25 radiation 20.0 10 < th dose dependent rect. 5 14
412 193.35 temperature 10.0 10 > th dose independent rect. 10 4
414 193.35 atmosphere 995.0 10 > th dose independent rect. 10 4
415 193.35 atmosphere 1015.0 10 < th dose independent rect. 10 4
416 193.35 precipitation 0.1 10 < th dose independent rect. 10 4
418 193.35 temperature 10.0 10 > th dose independent rect. 14 20
419 193.35 precipitation 0.1 10 < th dose dependent rect. 10 4
429 193.56 wind 1.0 270 > th dose dependent rect. 13 4
435 193.67 radiation 1.0 270 > th dose independent rect. 13 4
455 193.87 precipitation 0.1 270 < th dose independent rect. 13 19
457 193.87 precipitation 0.1 270 < th dose dependent rect. 13 19
467 194.00 atmosphere 1015.0 10 < th dose independent rect. 14 20
496 194.14 radiation 40.0 10 < th dose dependent rect. 13 6
497 194.15 wind 9.0 10 < th dose independent rect. 10 4
503 194.20 wind 9.0 10 < th dose independent rect. 14 20
515 194.29 humidity 90.0 10 < th dose independent rect. 10 4
527 194.41 radiation 10.0 10 > th dose independent rect. 8 23
537 194.46 wind 9.0 270 < th dose independent rect. 17 10
545 194.52 humidity 50.0 270 > th dose independent rect. 13 18
562 194.63 temperature 10.0 90 > th dose independent rect. 15 18
568 194.68 wind 1.0 10 > th dose independent rect. 10 4
580 194.74 radiation 10.0 10 < th dose independent rect. 13 6
589 194.78 radiation 20.0 30 < th dose independent rect. 13 22
602 194.88 temperature 10.0 1440 > th dose independent rect. 11 4
617 194.88 temperature 10.0 1440 > th dose independent rect. 15 20
654 195.05 temperature 10.0 270 > th dose dependent rect. 9 3
677 195.19 temperature 10.0 270 > th dose independent rect. 17 10
678 195.19 radiation 20.0 270 < th dose independent rect. 17 10
681 195.19 temperature 10.0 270 > th dose independent rect. 3 14
682 195.19 atmosphere 1015.0 270 < th dose independent rect. 3 14
697 195.34 radiation 20.0 10 < th dose independent rect. 1 18
702 195.38 wind 9.0 270 < th dose independent rect. 3 14
704 195.40 radiation 40.0 10 < th dose independent rect. 14 7
705 195.41 radiation 10.0 10 < th dose independent sin 22 NA
709 195.46 radiation 1.0 270 > th dose independent rect. 18 19
741 195.61 wind 9.0 90 < th dose independent rect. 15 18
760 195.75 humidity 90.0 270 < th dose independent rect. 10 1
761 195.75 temperature 10.0 10 > th dose dependent rect. 10 4
776 195.80 wind 1.0 90 > th dose dependent rect. 14 7
814 196.11 radiation 40.0 270 < th dose dependent rect. 22 10
825 196.17 humidity 50.0 10 > th dose dependent rect. 14 20
827 196.18 radiation 30.0 10 < th dose dependent rect. 1 18
830 196.20 humidity 50.0 10 > th dose independent rect. 10 4
831 196.21 temperature 10.0 10 > th dose independent rect. 14 7
833 196.21 atmosphere 1010.0 10 < th dose independent rect. 14 7
835 196.21 temperature 10.0 10 > th dose independent rect. 21 17
836 196.21 atmosphere 995.0 10 > th dose independent rect. 21 17
850 196.30 radiation 40.0 10 < th dose independent rect. 14 20
876 196.44 radiation 1.0 270 > th dose independent rect. 17 21
890 196.51 radiation 40.0 270 < th dose dependent rect. 17 10
926 196.60 temperature 30.0 270 < th dose independent rect. 13 4
944 196.70 wind 1.0 10 > th dose independent rect. 14 7
956 196.74 radiation 40.0 270 < th dose dependent rect. 15 2
982 196.85 humidity 50.0 270 > th dose independent rect. 17 10
986 196.87 radiation 40.0 90 < th dose dependent rect. 13 5